2ra9

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[[Image:2ra9.gif|left|200px]]<br /><applet load="2ra9" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ra9, resolution 1.400&Aring;" />
 
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'''Crystal structure of protein of unknown function DUF1285 (YP_001050848.1) from Shewanella baltica OS155 at 1.40 A resolution'''<br />
 
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==About this Structure==
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==Crystal structure of a duf1285 family protein (sbal_2486) from shewanella baltica os155 at 1.40 A resolution==
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2RA9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_baltica_os155 Shewanella baltica os155] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RA9 OCA].
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<StructureSection load='2ra9' size='340' side='right'caption='[[2ra9]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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[[Category: Shewanella baltica os155]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2ra9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_baltica_OS155 Shewanella baltica OS155]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RA9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RA9 FirstGlance]. <br>
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[[Category: JCSG, Joint Center for Structural Genomics.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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[[Category: EDO]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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[[Category: NA]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ra9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ra9 OCA], [https://pdbe.org/2ra9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ra9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ra9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ra9 ProSAT], [https://www.topsan.org/Proteins/JCSG/2ra9 TOPSAN]</span></td></tr>
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[[Category: jcsg]]
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</table>
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[[Category: joint center for structural genomics]]
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== Function ==
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[[Category: protein of unknown function duf1285]]
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[https://www.uniprot.org/uniprot/A3D5G6_SHEB5 A3D5G6_SHEB5]
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[[Category: protein structure initiative]]
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== Evolutionary Conservation ==
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[[Category: psi-2]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: structural genomics]]
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Check<jmol>
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[[Category: unknown function]]
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<jmolCheckbox>
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[[Category: yp_001050848 1]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2ra9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ra9 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The crystal structures of SPO0140 and Sbal_2486 were determined using the semiautomated high-throughput pipeline of the Joint Center for Structural Genomics (JCSG) as part of the NIGMS Protein Structure Initiative (PSI). The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:45:46 2008''
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Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.,Han GW, Bakolitsa C, Miller MD, Kumar A, Carlton D, Najmanovich RJ, Abdubek P, Astakhova T, Axelrod HL, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ernst D, Feuerhelm J, Grant JC, Grzechnik A, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Krishna SS, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt, 10):1218-25. Epub 2010 Mar 5. PMID:20944214<ref>PMID:20944214</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2ra9" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Shewanella baltica OS155]]

Current revision

Crystal structure of a duf1285 family protein (sbal_2486) from shewanella baltica os155 at 1.40 A resolution

PDB ID 2ra9

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