4mdt

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{{STRUCTURE_4mdt| PDB=4mdt | SCENE= }}
 
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===Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine===
 
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{{ABSTRACT_PUBMED_24108127}}
 
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==Function==
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==Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine==
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[[http://www.uniprot.org/uniprot/K0BGQ2_ECO1E K0BGQ2_ECO1E]] Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity).[HAMAP-Rule:MF_00388][SAAS:SAAS015870_004_013136]
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<StructureSection load='4mdt' size='340' side='right'caption='[[4mdt]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4mdt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MDT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.59&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=24G:URIDINE-5-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-GLUCOSAMINE'>24G</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mdt OCA], [https://pdbe.org/4mdt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mdt RCSB], [https://www.ebi.ac.uk/pdbsum/4mdt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mdt ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The emergence of antibiotic-resistant strains of pathogenic bacteria is an increasing threat to global health that underscores an urgent need for an expanded antibacterial armamentarium. Gram-negative bacteria, such as Escherichia coli, have become increasingly important clinical pathogens with limited treatment options. This is due in part to their lipopolysaccharide (LPS) outer membrane components, which dually serve as endotoxins while also protecting Gram-negative bacteria from antibiotic entry. The LpxC enzyme catalyzes the committed step of LPS biosynthesis, making LpxC a promising target for new antibacterials. Here we present the first structure of an LpxC enzyme in complex with the deacetylation reaction product, UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine. These studies provide valuable insight into recognition of substrates and products by LpxC and a platform for structure-guided drug discovery of broad-spectrum Gram-negative antibiotics.
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==About this Structure==
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Structure of the bacterial deacetylase LpxC bound to the nucleotide reaction product reveals mechanisms of oxyanion stabilization and proton transfer.,Clayton GM, Klein DJ, Rickert KW, Patel SB, Kornienko M, Zugay-Murphy J, Reid JC, Tummala S, Sharma S, Singh SB, Miesel L, Lumb KJ, Soisson SM J Biol Chem. 2013 Oct 9. PMID:24108127<ref>PMID:24108127</ref>
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[[4mdt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MDT OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:024108127</ref><references group="xtra"/><references/>
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</div>
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[[Category: Bacillus coli migula 1895]]
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<div class="pdbe-citations 4mdt" style="background-color:#fffaf0;"></div>
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[[Category: Clayton, G M.]]
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[[Category: Klein, D J.]]
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==See Also==
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[[Category: Kornienko, M.]]
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*[[UDP-3-O-acyl-N-acetylglucosamine deacetylase|UDP-3-O-acyl-N-acetylglucosamine deacetylase]]
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[[Category: Lumb, K J.]]
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== References ==
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[[Category: Miesel, L.]]
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<references/>
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[[Category: Patel, S B.]]
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__TOC__
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[[Category: Reid, J C.]]
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</StructureSection>
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[[Category: Rickert, K W.]]
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[[Category: Escherichia coli]]
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[[Category: Sharma, S.]]
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[[Category: Large Structures]]
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[[Category: Singh, S B.]]
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[[Category: Clayton GM]]
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[[Category: Soisson, S M.]]
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[[Category: Klein DJ]]
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[[Category: Tummala, S.]]
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[[Category: Kornienko M]]
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[[Category: Zugay-Murphy, J.]]
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[[Category: Lumb KJ]]
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[[Category: Deacetylase]]
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[[Category: Miesel L]]
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[[Category: Hydrolase]]
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[[Category: Patel SB]]
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[[Category: Reid JC]]
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[[Category: Rickert KW]]
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[[Category: Sharma S]]
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[[Category: Singh SB]]
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[[Category: Soisson SM]]
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[[Category: Tummala S]]
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[[Category: Zugay-Murphy J]]

Current revision

Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine

PDB ID 4mdt

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