4bga

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:50, 20 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_4bga| PDB=4bga | SCENE= }}
 
-
===Nucleotide-bound open form of a putative sugar kinase MK0840 from Methanopyrus kandleri===
 
-
{{ABSTRACT_PUBMED_24311585}}
 
-
==About this Structure==
+
==Nucleotide-bound open form of a putative sugar kinase MK0840 from Methanopyrus kandleri==
-
[[4bga]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Metka Metka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BGA OCA].
+
<StructureSection load='4bga' size='340' side='right'caption='[[4bga]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4bga]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanopyrus_kandleri_AV19 Methanopyrus kandleri AV19]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BGA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BGA FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bga FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bga OCA], [https://pdbe.org/4bga PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bga RCSB], [https://www.ebi.ac.uk/pdbsum/4bga PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bga ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8TX37_METKA Q8TX37_METKA]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Murein recycling is a process in which microorganisms recover peptidoglycan-degradation products in order to utilize them in cell wall biosynthesis or basic metabolic pathways. Methanogens such as Methanopyrus kandleri contain pseudomurein, which differs from bacterial murein in its composition and branching. Here, four crystal structures of the putative sugar kinase MK0840 from M. kandleri in apo and nucleotide-bound states are reported. MK0840 shows high similarity to bacterial anhydro-N-acetylmuramic acid kinase, which is involved in murein recycling. The structure shares a common fold with panthothenate kinase and the 2-hydroxyglutaryl-CoA dehydratase component A, both of which are members of the ASKHA (acetate and sugar kinases/Hsc70/actin) superfamily of phosphotransferases. Local conformational changes in the nucleotide-binding site between the apo and holo forms are observed upon nucleotide binding. Further insight is given into domain movements and putative active-site residues are identified.
-
==Reference==
+
Structural characterization of the ribonuclease H-like type ASKHA superfamily kinase MK0840 from Methanopyrus kandleri.,Schacherl M, Waltersperger S, Baumann U Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2440-50. doi:, 10.1107/S0907444913022683. Epub 2013 Nov 19. PMID:24311585<ref>PMID:24311585</ref>
-
<ref group="xtra">PMID:024311585</ref><references group="xtra"/><references/>
+
 
-
[[Category: Metka]]
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Baumann, U.]]
+
</div>
-
[[Category: Schacherl, M.]]
+
<div class="pdbe-citations 4bga" style="background-color:#fffaf0;"></div>
-
[[Category: Askha superfamily]]
+
== References ==
-
[[Category: Phosphotransfer]]
+
<references/>
-
[[Category: Pseudomurein]]
+
__TOC__
-
[[Category: Transferase]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Methanopyrus kandleri AV19]]
 +
[[Category: Baumann U]]
 +
[[Category: Schacherl M]]

Current revision

Nucleotide-bound open form of a putative sugar kinase MK0840 from Methanopyrus kandleri

PDB ID 4bga

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4bga"
Personal tools