2v8t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:10, 13 December 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2v8t.jpg|left|200px]]<br /><applet load="2v8t" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2v8t, resolution 0.98&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF MN CATALASE FROM THERMUS THERMOPHILUS COMPLEXED WITH CHLORIDE'''<br />
 
-
==About this Structure==
+
==Crystal structure of Mn catalase from Thermus Thermophilus complexed with chloride==
-
2V8T is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=MN:'>MN</scene>, <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=LI:'>LI</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] Known structural/functional Site: <scene name='pdbsite=AC1:So4+Binding+Site+For+Chain+A'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8T OCA].
+
<StructureSection load='2v8t' size='340' side='right'caption='[[2v8t]], [[Resolution|resolution]] 0.98&Aring;' scene=''>
-
[[Category: Catalase]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2v8t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V8T FirstGlance]. <br>
-
[[Category: Thermus thermophilus]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.98&#8491;</td></tr>
-
[[Category: Antonyuk, S V.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Artymiuk, P J.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v8t OCA], [https://pdbe.org/2v8t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v8t RCSB], [https://www.ebi.ac.uk/pdbsum/2v8t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v8t ProSAT]</span></td></tr>
-
[[Category: Barynin, V V.]]
+
</table>
-
[[Category: Harrison, P M.]]
+
== Function ==
-
[[Category: Lamsin, V S.]]
+
[https://www.uniprot.org/uniprot/Q72GH6_THET2 Q72GH6_THET2]
-
[[Category: Melik-Adamyan, W R.]]
+
== Evolutionary Conservation ==
-
[[Category: Popov, A N.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Vaguine, A A.]]
+
Check<jmol>
-
[[Category: CL]]
+
<jmolCheckbox>
-
[[Category: LI]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/2v8t_consurf.spt"</scriptWhenChecked>
-
[[Category: MN]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: SO4]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: manganese catalase]]
+
</jmolCheckbox>
-
[[Category: oxidoreductase]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v8t ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:54:05 2008''
+
==See Also==
 +
*[[Catalase 3D structures|Catalase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB27]]
 +
[[Category: Antonyuk SV]]
 +
[[Category: Artymiuk PJ]]
 +
[[Category: Barynin VV]]
 +
[[Category: Harrison PM]]
 +
[[Category: Lamsin VS]]
 +
[[Category: Melik-Adamyan WR]]
 +
[[Category: Popov AN]]
 +
[[Category: Vaguine AA]]

Current revision

Crystal structure of Mn catalase from Thermus Thermophilus complexed with chloride

PDB ID 2v8t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools