2yv2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2yv2.gif|left|200px]]<br /><applet load="2yv2" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2yv2, resolution 2.20&Aring;" />
 
-
'''Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Aeropyrum pernix K1'''<br />
 
-
==About this Structure==
+
==Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Aeropyrum pernix K1==
-
2YV2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Active as [http://en.wikipedia.org/wiki/Succinate--CoA_ligase_(ADP-forming) Succinate--CoA ligase (ADP-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.5 6.2.1.5] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YV2 OCA].
+
<StructureSection load='2yv2' size='340' side='right'caption='[[2yv2]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
[[Category: Aeropyrum pernix]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2yv2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YV2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YV2 FirstGlance]. <br>
-
[[Category: Succinate--CoA ligase (ADP-forming)]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
[[Category: Kuramitsu, S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yv2 OCA], [https://pdbe.org/2yv2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yv2 RCSB], [https://www.ebi.ac.uk/pdbsum/2yv2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yv2 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yv2 TOPSAN]</span></td></tr>
-
[[Category: Niwa, H.]]
+
</table>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
== Function ==
-
[[Category: Yokoyama, S.]]
+
[https://www.uniprot.org/uniprot/Q9YD40_AERPE Q9YD40_AERPE]
-
[[Category: coa-binding domain]]
+
== Evolutionary Conservation ==
-
[[Category: ligase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: national project on protein structural and functional analyses]]
+
Check<jmol>
-
[[Category: nppsfa]]
+
<jmolCheckbox>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/2yv2_consurf.spt"</scriptWhenChecked>
-
[[Category: rsgi]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yv2 ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:58:02 2008''
+
==See Also==
 +
*[[Succinyl-CoA synthetase 3D structures|Succinyl-CoA synthetase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Aeropyrum pernix K1]]
 +
[[Category: Large Structures]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Niwa H]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Aeropyrum pernix K1

PDB ID 2yv2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2yv2"
Personal tools