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2yzl

From Proteopedia

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[[Image:2yzl.jpg|left|200px]]<br /><applet load="2yzl" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2yzl, resolution 2.20&Aring;" />
 
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'''Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii'''<br />
 
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==About this Structure==
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==Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii==
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2YZL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=ADP:'>ADP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phosphoribosylaminoimidazolesuccinocarboxamide_synthase Phosphoribosylaminoimidazolesuccinocarboxamide synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.6 6.3.2.6] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZL OCA].
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<StructureSection load='2yzl' size='340' side='right'caption='[[2yzl]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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[[Category: Methanocaldococcus jannaschii]]
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== Structural highlights ==
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[[Category: Phosphoribosylaminoimidazolesuccinocarboxamide synthase]]
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<table><tr><td colspan='2'>[[2yzl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZL FirstGlance]. <br>
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[[Category: Single protein]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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[[Category: Baba, S.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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[[Category: Fukui, K.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzl OCA], [https://pdbe.org/2yzl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzl RCSB], [https://www.ebi.ac.uk/pdbsum/2yzl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzl ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzl TOPSAN]</span></td></tr>
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[[Category: Kanagawa, M.]]
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</table>
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[[Category: Kawai, G.]]
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== Function ==
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[[Category: Kuramitsu, S.]]
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[https://www.uniprot.org/uniprot/PUR7_METJA PUR7_METJA]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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== Evolutionary Conservation ==
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[[Category: Sampei, G.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Yokoyama, S.]]
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Check<jmol>
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[[Category: ADP]]
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<jmolCheckbox>
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[[Category: SO4]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzl_consurf.spt"</scriptWhenChecked>
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[[Category: 2-layer sandwich]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: ligase]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: national project on protein structural and functional analyses]]
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</jmolCheckbox>
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[[Category: nppsfa]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzl ConSurf].
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[[Category: purine biosynthesis]]
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<div style="clear:both"></div>
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: structural genomics]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:59:02 2008''
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==See Also==
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*[[SAICAR synthetase|SAICAR synthetase]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Methanocaldococcus jannaschii]]
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[[Category: Baba S]]
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[[Category: Fukui K]]
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[[Category: Kanagawa M]]
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[[Category: Kawai G]]
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[[Category: Kuramitsu S]]
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[[Category: Sampei G]]
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[[Category: Yokoyama S]]

Current revision

Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii

PDB ID 2yzl

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