3w40
From Proteopedia
(Difference between revisions)
(5 intermediate revisions not shown.) | |||
Line 1: | Line 1: | ||
- | {{STRUCTURE_3w40| PDB=3w40 | SCENE= }} | ||
- | ===Crystal structure of RsbX in complex with magnesium in space group P1=== | ||
- | == | + | ==Crystal structure of RsbX in complex with magnesium in space group P1== |
- | [[http://www.uniprot.org/uniprot/RSBX_BACSU RSBX_BACSU | + | <StructureSection load='3w40' size='340' side='right'caption='[[3w40]], [[Resolution|resolution]] 1.30Å' scene=''> |
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[3w40]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W40 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w40 OCA], [https://pdbe.org/3w40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w40 RCSB], [https://www.ebi.ac.uk/pdbsum/3w40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w40 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/RSBX_BACSU RSBX_BACSU] Negative regulator of sigma-B activity. Dephosphorylates RsbS. Plays a role both in maintaining low sigma-B activity during growth and in reestablishing prestress sigma-B activity after induction. Could have a negative feedback role by indirectly communicating sigma-B protein levels.<ref>PMID:1592822</ref> <ref>PMID:8468294</ref> <ref>PMID:8824586</ref> <ref>PMID:9658013</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | In the general stress response of Bacillus subtilis, which is governed by the sigma factor sigma(B), stress signalling is relayed by a cascade of Rsb proteins that regulate sigma(B) activity. RsbX, a PPM II phosphatase, halts the response by dephosphorylating the stressosome composed of RsbR and RsbS. The crystal structure of RsbX reveals a reorganization of the catalytic centre, with the second Mn(2+) ion uniquely coordinated by Gly47 O from the beta4-alpha1 loop instead of a water molecule as in PPM I phosphatases. An extra helical turn of alpha1 tilts the loop towards the metal-binding site, and the beta2-beta3 loop swings outwards to accommodate this tilting. The residues critical for this defining feature of the PPM II phosphatases are highly conserved. Formation of the catalytic centre is metal-specific, as crystallization with Mg(2+) ions resulted in a shift of the beta4-alpha1 loop that led to loss of the second ion. RsbX also lacks the flap subdomain characteristic of PPM I phosphatases. On the basis of a stressosome model, the activity of RsbX towards RsbR-P and RsbS-P may be influenced by the different accessibilities of their phosphorylation sites. | ||
- | + | Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis.,Teh AH, Makino M, Hoshino T, Baba S, Shimizu N, Yamamoto M, Kumasaka T Acta Crystallogr D Biol Crystallogr. 2015 Jun;71(Pt 6):1392-9. doi:, 10.1107/S1399004715007166. Epub 2015 May 23. PMID:26057679<ref>PMID:26057679</ref> | |
- | + | ||
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | < | + | </div> |
- | [[ | + | <div class="pdbe-citations 3w40" style="background-color:#fffaf0;"></div> |
- | + | ||
- | + | ==See Also== | |
- | + | *[[Phosphoserine phosphatase|Phosphoserine phosphatase]] | |
- | + | == References == | |
- | [[Category: | + | <references/> |
- | + | __TOC__ | |
- | [[Category: | + | </StructureSection> |
- | [[Category: | + | [[Category: Bacillus subtilis subsp. subtilis str. 168]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Baba S]] |
- | [[Category: | + | [[Category: Kumasaka T]] |
- | [[Category: | + | [[Category: Makino M]] |
- | [[Category: | + | [[Category: Shimizu N]] |
- | + | [[Category: Teh AH]] | |
- | + | [[Category: Yamamoto M]] | |
- | + | ||
- | + |
Current revision
Crystal structure of RsbX in complex with magnesium in space group P1
|