3b7y

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[[Image:3b7y.gif|left|200px]]<br /><applet load="3b7y" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="3b7y, resolution 1.80&Aring;" />
 
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'''Crystal structure of the C2 Domain of the E3 Ubiquitin-Protein Ligase NEDD4'''<br />
 
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==About this Structure==
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==Crystal structure of the C2 Domain of the E3 Ubiquitin-Protein Ligase NEDD4==
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3B7Y is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B7Y OCA].
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<StructureSection load='3b7y' size='340' side='right'caption='[[3b7y]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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[[Category: Homo sapiens]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[3b7y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B7Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B7Y FirstGlance]. <br>
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[[Category: Arrowsmith, C H.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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[[Category: Bochkarev, A.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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[[Category: Butler-Cole, C.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b7y OCA], [https://pdbe.org/3b7y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b7y RCSB], [https://www.ebi.ac.uk/pdbsum/3b7y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b7y ProSAT]</span></td></tr>
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[[Category: Dhe-Paganon, S.]]
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</table>
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[[Category: Edwards, A M.]]
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== Function ==
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[[Category: Ruzanov, M.]]
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[https://www.uniprot.org/uniprot/NEDD4_HUMAN NEDD4_HUMAN] E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in the pathway leading to the degradation of VEGFR-2/KDFR, independently of its ubiquitin-ligase activity. Monoubiquitinates IGF1R at multiple sites, thus leading to receptor internalization and degradation in lysosomes. Ubiquitinates FGFR1, leading to receptor internalization and degradation in lysosomes. According to PubMed:18562292 the direct link between NEDD4 and PTEN regulation through polyubiquitination described in PubMed:17218260 is questionable. Involved in ubiquitination of ERBB4 intracellular domain E4ICD. Involved in the budding of many viruses. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. Ubiquitinates TNK2 and regulates EGF-induced degradation of EGFR and TNF2.<ref>PMID:17218260</ref> <ref>PMID:18562292</ref> <ref>PMID:20086093</ref> <ref>PMID:21765395</ref> <ref>PMID:21399620</ref>
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[[Category: SGC, Structural Genomics Consortium.]]
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== Evolutionary Conservation ==
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[[Category: Walker, J R.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Weigelt, J.]]
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Check<jmol>
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[[Category: CA]]
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<jmolCheckbox>
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[[Category: c2 domain]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/3b7y_consurf.spt"</scriptWhenChecked>
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[[Category: cytoplasm]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: host-virus interaction]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: ligase]]
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</jmolCheckbox>
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[[Category: phosphorylation]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b7y ConSurf].
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[[Category: polymorphism]]
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<div style="clear:both"></div>
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[[Category: sgc]]
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[[Category: structural genomics consortium]]
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[[Category: ubl conjugation pathway]]
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[[Category: ubl-conjugation pathway]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:03:57 2008''
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==See Also==
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*[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Arrowsmith CH]]
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[[Category: Bochkarev A]]
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[[Category: Butler-Cole C]]
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[[Category: Dhe-Paganon S]]
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[[Category: Edwards AM]]
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[[Category: Ruzanov M]]
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[[Category: Walker JR]]
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[[Category: Weigelt J]]

Current revision

Crystal structure of the C2 Domain of the E3 Ubiquitin-Protein Ligase NEDD4

PDB ID 3b7y

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