3bbp

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[[Image:3bbp.jpg|left|200px]]<br /><applet load="3bbp" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="3bbp, resolution 3.0&Aring;" />
 
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'''Rab6-GTP:GCC185 Rab binding domain complex'''<br />
 
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==About this Structure==
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==Rab6-GTP:GCC185 Rab binding domain complex==
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3BBP is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=GTP:'>GTP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+501'>AC1</scene>, <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+B+501'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Residue+C+501'>AC3</scene>, <scene name='pdbsite=AC4:Gtp+Binding+Site+For+Residue+A+500'>AC4</scene>, <scene name='pdbsite=AC5:Gtp+Binding+Site+For+Residue+B+500'>AC5</scene> and <scene name='pdbsite=AC6:Gtp+Binding+Site+For+Residue+C+500'>AC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BBP OCA].
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<StructureSection load='3bbp' size='340' side='right'caption='[[3bbp]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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[[Category: Homo sapiens]]
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== Structural highlights ==
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[[Category: Protein complex]]
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<table><tr><td colspan='2'>[[3bbp]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BBP FirstGlance]. <br>
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[[Category: Brunger, A T.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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[[Category: Burguete, A Schweizer.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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[[Category: Fenn, T D.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bbp OCA], [https://pdbe.org/3bbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bbp RCSB], [https://www.ebi.ac.uk/pdbsum/3bbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bbp ProSAT]</span></td></tr>
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[[Category: Pfeffer, S R.]]
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</table>
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[[Category: GTP]]
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== Function ==
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[[Category: MG]]
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[https://www.uniprot.org/uniprot/RAB6A_HUMAN RAB6A_HUMAN] Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.
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[[Category: acetylation]]
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== Evolutionary Conservation ==
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[[Category: alternative splicing]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: coiled coil]]
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Check<jmol>
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[[Category: cytoplasm]]
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<jmolCheckbox>
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[[Category: er-golgi transport]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bb/3bbp_consurf.spt"</scriptWhenChecked>
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[[Category: golgi apparatus]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: golgi complex; grip domain; rab gtpase; arl gtpase; golgin; rab effector; clasp protein]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: gtp-binding]]
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</jmolCheckbox>
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[[Category: lipoprotein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bbp ConSurf].
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[[Category: membrane]]
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<div style="clear:both"></div>
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[[Category: methylation]]
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<div style="background-color:#fffaf0;">
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[[Category: nucleotide-binding]]
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== Publication Abstract from PubMed ==
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[[Category: phosphorylation]]
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GCC185 is a large coiled-coil protein at the trans Golgi network that is required for receipt of transport vesicles inbound from late endosomes and for anchoring noncentrosomal microtubules that emanate from the Golgi. Here, we demonstrate that recruitment of GCC185 to the Golgi is mediated by two Golgi-localized small GTPases of the Rab and Arl families. GCC185 binds Rab6, and mutation of residues needed for Rab binding abolishes Golgi localization. The crystal structure of Rab6 bound to the GCC185 Rab-binding domain reveals that Rab6 recognizes a two-fold symmetric surface on a coiled coil immediately adjacent to a C-terminal GRIP domain. Unexpectedly, Rab6 binding promotes association of Arl1 with the GRIP domain. We present a structure-derived model for dual GTPase membrane attachment that highlights the potential ability of Rab GTPases to reach binding partners at a significant distance from the membrane via their unstructured and membrane-anchored, hypervariable domains.
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[[Category: polymorphism]]
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[[Category: prenylation]]
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[[Category: protein transport]]
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[[Category: protein transport/splicing complex]]
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[[Category: transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:04:39 2008''
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Rab and Arl GTPase family members cooperate in the localization of the golgin GCC185.,Burguete AS, Fenn TD, Brunger AT, Pfeffer SR Cell. 2008 Jan 25;132(2):286-98. PMID:18243103<ref>PMID:18243103</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3bbp" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Brunger AT]]
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[[Category: Fenn TD]]
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[[Category: Pfeffer SR]]
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[[Category: Schweizer Burguete A]]

Current revision

Rab6-GTP:GCC185 Rab binding domain complex

PDB ID 3bbp

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