3zjk

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{{STRUCTURE_3zjk| PDB=3zjk | SCENE= }}
 
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===crystal structure of Ttb-gly F401S mutant===
 
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{{ABSTRACT_PUBMED_24287187}}
 
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==About this Structure==
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==crystal structure of Ttb-gly F401S mutant==
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[[3zjk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJK OCA].
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<StructureSection load='3zjk' size='340' side='right'caption='[[3zjk]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3zjk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZJK FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjk OCA], [https://pdbe.org/3zjk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zjk RCSB], [https://www.ebi.ac.uk/pdbsum/3zjk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjk ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9RA61_THETH Q9RA61_THETH]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A large number of retaining glycosidases catalyze both hydrolysis and transglycosylation reactions, but little is known about what determines the balance between these two activities (transglycosylation/hydrolysis ratio). We previously obtained by directed evolution the mutants F401S and N282T of Thermus thermophilus beta-glycosidase (Ttbeta-gly, glycoside hydrolase family 1 (GH1)), which display a higher transglycosylation/hydrolysis ratio than the wild-type enzyme. In order to find the cause of these activity modifications, and thereby set up a generic method for easily obtaining transglycosidases from glycosidases, we determined their X-ray structure. No major structural changes could be observed which could help to rationalize the mutagenesis of glycosidases into transglycosidases. However, as these mutations are highly conserved in GH1 beta-glycosidases and are located around the -1 site, we pursued the isolation of new transglycosidases by targeting highly conserved amino acids located around the active site. Thus, by single-point mutagenesis on Ttbeta-gly, we created four new mutants that exhibit improved synthetic activity, producing disaccharides in yields of 68-90% against only 36% when native Ttbeta-gly was used. As all of the chosen positions were well conserved among GH1 enzymes, this approach is most probably a general route to convert GH1 glycosidases into transglycosidases.
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==Reference==
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Semi-rational approach for converting a GH1 beta-glycosidase into a beta-transglycosidase.,Teze D, Hendrickx J, Czjzek M, Ropartz D, Sanejouand YH, Tran V, Tellier C, Dion M Protein Eng Des Sel. 2014 Jan;27(1):13-9. doi: 10.1093/protein/gzt057. Epub 2013 , Nov 27. PMID:24287187<ref>PMID:24287187</ref>
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<ref group="xtra">PMID:024287187</ref><references group="xtra"/><references/>
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[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Beta-glucosidase]]
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</div>
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[[Category: Czjzek, M.]]
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<div class="pdbe-citations 3zjk" style="background-color:#fffaf0;"></div>
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[[Category: Dion, M.]]
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== References ==
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[[Category: Leroux, C.]]
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<references/>
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[[Category: Roncza, J.]]
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__TOC__
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[[Category: Tellier, C.]]
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</StructureSection>
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[[Category: Teze, D.]]
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[[Category: Large Structures]]
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[[Category: Tran, V.]]
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[[Category: Thermus thermophilus]]
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[[Category: Glycoside hydrolase family 1]]
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[[Category: Czjzek M]]
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[[Category: Hydrolase]]
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[[Category: Dion M]]
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[[Category: Transglycosidase]]
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[[Category: Leroux C]]
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[[Category: Roncza J]]
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[[Category: Tellier C]]
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[[Category: Teze D]]
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[[Category: Tran V]]

Current revision

crystal structure of Ttb-gly F401S mutant

PDB ID 3zjk

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