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3bii

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(New page: 200px<br /><applet load="3bii" size="350" color="white" frame="true" align="right" spinBox="true" caption="3bii, resolution 2.500&Aring;" /> '''Crystal Structure o...)
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[[Image:3bii.jpg|left|200px]]<br /><applet load="3bii" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="3bii, resolution 2.500&Aring;" />
 
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'''Crystal Structure of Activated MPT Synthase'''<br />
 
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==Overview==
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==Crystal Structure of Activated MPT Synthase==
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<StructureSection load='3bii' size='340' side='right'caption='[[3bii]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3bii]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BII OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BII FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GL3:THIOGLYCIN'>GL3</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fm0|1fm0]], [[1fma|1fma]], [[1nvi|1nvi]], [[1nvj|1nvj]], [[2q5w|2q5w]], [[2qie|2qie]]</div></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">moaD, chlA4, chlM ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), moaE, chlA5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bii FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bii OCA], [https://pdbe.org/3bii PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bii RCSB], [https://www.ebi.ac.uk/pdbsum/3bii PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bii ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/MOAD_ECOLI MOAD_ECOLI]] Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin.<ref>PMID:17223713</ref> [[https://www.uniprot.org/uniprot/MOAE_ECOLI MOAE_ECOLI]] Converts molybdopterin precursor Z to molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur is provided by MoaD.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/3bii_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bii ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
In almost all biological life forms, molybdenum and tungsten are coordinated by molybdopterin (MPT), a tricyclic pyranopterin containing a cis-dithiolene group. Together, the metal and the pterin moiety form the redox reactive molybdenum cofactor (Moco). Mutations in patients with deficiencies in Moco biosynthesis usually occur in the enzymes catalyzing the first and second steps of biosynthesis, leading to the formation of precursor Z and MPT, respectively. The second step is catalyzed by the heterotetrameric MPT synthase protein consisting of two large (MoaE) and two small (MoaD) subunits with the MoaD subunits located at opposite ends of a central MoaE dimer. Previous studies have determined that the conversion of the sulfur- and metal-free precursor Z to MPT by MPT synthase involves the transfer of sulfur atoms from a C-terminal MoaD thiocarboxylate to the C-1' and C-2' positions of precursor Z. Here, we present the crystal structures of non-thiocarboxylated MPT synthase from Staphylococcus aureus in its apo form and in complex with precursor Z. A comparison of the two structures reveals conformational changes in a loop that participates in interactions with precursor Z. In the complex, precursor Z is bound by strictly conserved residues in a pocket at the MoaE dimer interface in close proximity of the C-terminal glycine of MoaD. Biochemical evidence indicates that the first dithiolene sulfur is added at the C-2' position.
In almost all biological life forms, molybdenum and tungsten are coordinated by molybdopterin (MPT), a tricyclic pyranopterin containing a cis-dithiolene group. Together, the metal and the pterin moiety form the redox reactive molybdenum cofactor (Moco). Mutations in patients with deficiencies in Moco biosynthesis usually occur in the enzymes catalyzing the first and second steps of biosynthesis, leading to the formation of precursor Z and MPT, respectively. The second step is catalyzed by the heterotetrameric MPT synthase protein consisting of two large (MoaE) and two small (MoaD) subunits with the MoaD subunits located at opposite ends of a central MoaE dimer. Previous studies have determined that the conversion of the sulfur- and metal-free precursor Z to MPT by MPT synthase involves the transfer of sulfur atoms from a C-terminal MoaD thiocarboxylate to the C-1' and C-2' positions of precursor Z. Here, we present the crystal structures of non-thiocarboxylated MPT synthase from Staphylococcus aureus in its apo form and in complex with precursor Z. A comparison of the two structures reveals conformational changes in a loop that participates in interactions with precursor Z. In the complex, precursor Z is bound by strictly conserved residues in a pocket at the MoaE dimer interface in close proximity of the C-terminal glycine of MoaD. Biochemical evidence indicates that the first dithiolene sulfur is added at the C-2' position.
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==About this Structure==
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Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency.,Daniels JN, Wuebbens MM, Rajagopalan KV, Schindelin H Biochemistry. 2008 Jan 15;47(2):615-26. Epub 2007 Dec 20. PMID:18092812<ref>PMID:18092812</ref>
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3BII is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+E+301'>AC1</scene>, <scene name='pdbsite=AC2:Cl+Binding+Site+For+Residue+E+302'>AC2</scene>, <scene name='pdbsite=AC3:Cl+Binding+Site+For+Residue+D+303'>AC3</scene> and <scene name='pdbsite=AC4:Cl+Binding+Site+For+Residue+E+304'>AC4</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BII OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency., Daniels JN, Wuebbens MM, Rajagopalan KV, Schindelin H, Biochemistry. 2008 Jan 15;47(2):615-26. Epub 2007 Dec 20. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18092812 18092812]
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</div>
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[[Category: Escherichia coli]]
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<div class="pdbe-citations 3bii" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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== References ==
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[[Category: Daniels, J N.]]
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<references/>
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[[Category: Schindelin, H.]]
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__TOC__
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[[Category: CL]]
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</StructureSection>
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[[Category: beta-hammerhead fold]]
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[[Category: Bacillus coli migula 1895]]
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[[Category: moad]]
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[[Category: Large Structures]]
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[[Category: moae]]
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[[Category: Daniels, J N]]
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[[Category: moco biosynthesis]]
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[[Category: Schindelin, H]]
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[[Category: molybdenum cofactor biosynthesis]]
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[[Category: Beta-hammerhead fold]]
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[[Category: mpt synthase]]
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[[Category: Moad]]
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[[Category: transferase]]
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[[Category: Moae]]
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[[Category: ubiquitin-like]]
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[[Category: Moco biosynthesis]]
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[[Category: Molybdenum cofactor biosynthesis]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:05:58 2008''
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[[Category: Mpt synthase]]
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[[Category: Transferase]]
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[[Category: Ubiquitin-like]]

Current revision

Crystal Structure of Activated MPT Synthase

PDB ID 3bii

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