4ik8

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{{STRUCTURE_4ik8| PDB=4ik8 | SCENE= }}
 
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===High resolution structure of GCaMP3 dimer form 1 at pH 7.5===
 
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{{ABSTRACT_PUBMED_23549615}}
 
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==About this Structure==
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==High resolution structure of GCaMP3 dimer form 1 at pH 7.5==
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[[4ik8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IK8 OCA].
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<StructureSection load='4ik8' size='340' side='right'caption='[[4ik8]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ik8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria] and [https://en.wikipedia.org/wiki/Entacmaea_quadricolor Entacmaea quadricolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IK8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IK8 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ik8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ik8 OCA], [https://pdbe.org/4ik8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ik8 RCSB], [https://www.ebi.ac.uk/pdbsum/4ik8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ik8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/K4DIE3_ENTQU K4DIE3_ENTQU] [https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Genetically encoded Ca(2+) indicators (GECI) are important for the measurement of Ca(2+) in vivo. GCaMP2, a widely-used GECI, has recently been iteratively improved. Among the improved variants, GCaMP3 exhibits significantly better fluorescent intensity. In this study, we developed a new GECI called GCaMPJ and determined the crystal structures of GCaMP3 and GCaMPJ. GCaMPJ has a 1.5-fold increase in fluorescence and 1.3-fold increase in calcium affinity over GCaMP3. Upon Ca(2+) binding, GCaMP3 exhibits both monomeric and dimeric forms. The structural superposition of these two forms reveals the role of Arg-376 in improving monomer performance. However, GCaMPJ seldom forms dimers under conditions similar to GCaMP3. St ructural and mutagenesis studies on Tyr-380 confirmed its importance in blocking the cpEGFP beta-barrel holes. Our study proposes an efficient tool for mapping Ca(2+) signals in intact organs to facilitate the further improvement of GCaMP sensors.
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==Reference==
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Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.,Chen Y, Song X, Ye S, Miao L, Zhu Y, Zhang RG, Ji G Protein Cell. 2013 Apr;4(4):299-309. doi: 10.1007/s13238-013-2103-4. Epub 2013, Apr 3. PMID:23549615<ref>PMID:23549615</ref>
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<ref group="xtra">PMID:023549615</ref><references group="xtra"/><references/>
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[[Category: Chen, Y.]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Ji, G.]]
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</div>
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[[Category: Miao, L.]]
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<div class="pdbe-citations 4ik8" style="background-color:#fffaf0;"></div>
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[[Category: Song, X.]]
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[[Category: Zhu, Y.]]
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==See Also==
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[[Category: Beta-barrel]]
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*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
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[[Category: Calcium indicator]]
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== References ==
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[[Category: Calmodulin]]
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<references/>
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[[Category: Dimerization]]
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__TOC__
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[[Category: Fluorescent intensity]]
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</StructureSection>
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[[Category: Fluorescent protein]]
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[[Category: Aequorea victoria]]
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[[Category: Mutant]]
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[[Category: Entacmaea quadricolor]]
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[[Category: Large Structures]]
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[[Category: Chen Y]]
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[[Category: Ji G]]
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[[Category: Miao L]]
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[[Category: Song X]]
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[[Category: Zhu Y]]

Current revision

High resolution structure of GCaMP3 dimer form 1 at pH 7.5

PDB ID 4ik8

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