3bpd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:43, 6 November 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bpd.jpg|left|200px]]<br /><applet load="3bpd" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3bpd, resolution 2.8&Aring;" />
 
-
'''Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus'''<br />
 
-
==About this Structure==
+
==Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus==
-
3BPD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BPD OCA].
+
<StructureSection load='3bpd' size='340' side='right'caption='[[3bpd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
[[Category: Archaeoglobus fulgidus dsm 4304]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BPD FirstGlance]. <br>
-
[[Category: Burley, S K.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
[[Category: Eswaramoorthy, S.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bpd OCA], [https://pdbe.org/3bpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bpd RCSB], [https://www.ebi.ac.uk/pdbsum/3bpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bpd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bpd TOPSAN]</span></td></tr>
-
[[Category: Sauder, J M.]]
+
</table>
-
[[Category: Swaminathan, S.]]
+
== Evolutionary Conservation ==
-
[[Category: MG]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: 10197b]]
+
Check<jmol>
-
[[Category: heptamer]]
+
<jmolCheckbox>
-
[[Category: mg+2 ion]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bp/3bpd_consurf.spt"</scriptWhenChecked>
-
[[Category: new york structural genomix research consortium]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: nysgxrc]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: psi-2]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bpd ConSurf].
-
[[Category: structural genomics]]
+
<div style="clear:both"></div>
-
[[Category: unknown function]]
+
__TOC__
-
 
+
</StructureSection>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:06:55 2008''
+
[[Category: Large Structures]]
 +
[[Category: Burley SK]]
 +
[[Category: Eswaramoorthy S]]
 +
[[Category: Sauder JM]]
 +
[[Category: Swaminathan S]]

Current revision

Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus

PDB ID 3bpd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools