This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bvc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:31, 21 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bvc.jpg|left|200px]]<br /><applet load="3bvc" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3bvc, resolution 2.75&Aring;" />
 
-
'''Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM'''<br />
 
-
==About this Structure==
+
==Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM==
-
3BVC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ism Roseovarius nubinhibens ism] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=NI:'>NI</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Ca+Binding+Site+For+Residue+A+301'>AC1</scene>, <scene name='pdbsite=AC2:Ca+Binding+Site+For+Residue+A+302'>AC2</scene>, <scene name='pdbsite=AC3:Ni+Binding+Site+For+Residue+A+304'>AC3</scene> and <scene name='pdbsite=AC4:Ni+Binding+Site+For+Residue+B+305'>AC4</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVC OCA].
+
<StructureSection load='3bvc' size='340' side='right'caption='[[3bvc]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
-
[[Category: Roseovarius nubinhibens ism]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3bvc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ISM Roseovarius nubinhibens ISM]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BVC FirstGlance]. <br>
-
[[Category: Almo, S C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
[[Category: Iizuka, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bvc OCA], [https://pdbe.org/3bvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bvc RCSB], [https://www.ebi.ac.uk/pdbsum/3bvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bvc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bvc TOPSAN]</span></td></tr>
-
[[Category: Maletic, M.]]
+
</table>
-
[[Category: Meyer, A J.]]
+
== Function ==
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[https://www.uniprot.org/uniprot/A3SHZ8_ROSNI A3SHZ8_ROSNI]
-
[[Category: Patskovsky, Y.]]
+
== Evolutionary Conservation ==
-
[[Category: Rutter, M.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Sauder, J M.]]
+
Check<jmol>
-
[[Category: Smith, D.]]
+
<jmolCheckbox>
-
[[Category: Toro, R.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bvc_consurf.spt"</scriptWhenChecked>
-
[[Category: Wasserman, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: CA]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NI]]
+
</jmolCheckbox>
-
[[Category: iron-binding protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bvc ConSurf].
-
[[Category: new york structural genomix research consortium]]
+
<div style="clear:both"></div>
-
[[Category: nickel]]
+
__TOC__
-
[[Category: nysgxrc]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: psi-2]]
+
[[Category: Roseovarius nubinhibens ISM]]
-
[[Category: rhodobacterales]]
+
[[Category: Almo SC]]
-
[[Category: roseovarius nubinhibens ism]]
+
[[Category: Burley SK]]
-
[[Category: structural genomics]]
+
[[Category: Iizuka M]]
-
[[Category: unknown function]]
+
[[Category: Maletic M]]
-
 
+
[[Category: Meyer AJ]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:07:43 2008''
+
[[Category: Patskovsky Y]]
 +
[[Category: Rutter M]]
 +
[[Category: Sauder JM]]
 +
[[Category: Smith D]]
 +
[[Category: Toro R]]
 +
[[Category: Wasserman S]]

Current revision

Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM

PDB ID 3bvc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools