This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c18

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:29, 1 February 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c18.jpg|left|200px]]<br /><applet load="3c18" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3c18, resolution 1.900&Aring;" />
 
-
'''Crystal structure of nucleotidyltransferase-like protein (ZP_00538802.1) from Exiguobacterium sibiricum 255-15 at 1.90 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of nucleotidyltransferase-like protein (ZP_00538802.1) from Exiguobacterium sibiricum 255-15 at 1.90 A resolution==
-
3C18 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria] with <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+C+290'>AC1</scene>, <scene name='pdbsite=AC2:Cl+Binding+Site+For+Residue+C+291'>AC2</scene>, <scene name='pdbsite=AC3:Cl+Binding+Site+For+Residue+B+290'>AC3</scene>, <scene name='pdbsite=AC4:Gol+Binding+Site+For+Residue+B+291'>AC4</scene>, <scene name='pdbsite=AC5:Gol+Binding+Site+For+Residue+A+290'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Residue+B+292'>AC6</scene> and <scene name='pdbsite=AC7:Gol+Binding+Site+For+Residue+B+293'>AC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C18 OCA].
+
<StructureSection load='3c18' size='340' side='right'caption='[[3c18]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Bacteria]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3c18]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Exiguobacterium_sibiricum_255-15 Exiguobacterium sibiricum 255-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C18 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C18 FirstGlance]. <br>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: CL]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c18 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c18 OCA], [https://pdbe.org/3c18 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c18 RCSB], [https://www.ebi.ac.uk/pdbsum/3c18 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c18 ProSAT], [https://www.topsan.org/Proteins/JCSG/3c18 TOPSAN]</span></td></tr>
-
[[Category: GOL]]
+
</table>
-
[[Category: jcsg]]
+
== Function ==
-
[[Category: joint center for structural genomics]]
+
[https://www.uniprot.org/uniprot/B1YK61_EXIS2 B1YK61_EXIS2]
-
[[Category: nucleotidyltransferase-like protein]]
+
== Evolutionary Conservation ==
-
[[Category: protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: psi-2]]
+
Check<jmol>
-
[[Category: structural genomics]]
+
<jmolCheckbox>
-
[[Category: zp_00538802 1]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c1/3c18_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:05 2008''
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c18 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Exiguobacterium sibiricum 255-15]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of nucleotidyltransferase-like protein (ZP_00538802.1) from Exiguobacterium sibiricum 255-15 at 1.90 A resolution

PDB ID 3c18

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools