This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c24

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:29, 1 February 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c24.jpg|left|200px]]<br /><applet load="3c24" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3c24, resolution 1.620&Aring;" />
 
-
'''Crystal structure of a putative oxidoreductase (YP_511008.1) from Jannaschia sp. CCS1 at 1.62 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of a putative oxidoreductase (YP_511008.1) from Jannaschia sp. CCS1 at 1.62 A resolution==
-
3C24 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Jannaschia_sp._ccs1 Jannaschia sp. ccs1] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+B+286'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+286'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+287'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+B+287'>AC4</scene>, <scene name='pdbsite=AC5:Gol+Binding+Site+For+Residue+A+288'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Residue+B+288'>AC6</scene> and <scene name='pdbsite=AC7:Gol+Binding+Site+For+Residue+B+289'>AC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C24 OCA].
+
<StructureSection load='3c24' size='340' side='right'caption='[[3c24]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
-
[[Category: Jannaschia sp. ccs1]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3c24]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Jannaschia_sp._CCS1 Jannaschia sp. CCS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C24 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C24 FirstGlance]. <br>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: GOL]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c24 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c24 OCA], [https://pdbe.org/3c24 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c24 RCSB], [https://www.ebi.ac.uk/pdbsum/3c24 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c24 ProSAT], [https://www.topsan.org/Proteins/JCSG/3c24 TOPSAN]</span></td></tr>
-
[[Category: SO4]]
+
</table>
-
[[Category: a putative oxidoreductase]]
+
== Function ==
-
[[Category: jcsg]]
+
[https://www.uniprot.org/uniprot/Q28MS9_JANSC Q28MS9_JANSC]
-
[[Category: joint center for structural genomics]]
+
== Evolutionary Conservation ==
-
[[Category: protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: psi-2]]
+
Check<jmol>
-
[[Category: structural genomics]]
+
<jmolCheckbox>
-
[[Category: yp_511008 1]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c2/3c24_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:11 2008''
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c24 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Jannaschia sp. CCS1]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of a putative oxidoreductase (YP_511008.1) from Jannaschia sp. CCS1 at 1.62 A resolution

PDB ID 3c24

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools