3c1t

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(New page: 200px<br /><applet load="3c1t" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c1t, resolution 2.252&Aring;" /> '''Binding of two subs...)
Current revision (12:20, 30 August 2023) (edit) (undo)
 
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[[Image:3c1t.jpg|left|200px]]<br /><applet load="3c1t" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="3c1t, resolution 2.252&Aring;" />
 
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'''Binding of two substrate analogue molecules to dihydroflavonol 4-reductase alters the functional geometry of the catalytic site'''<br />
 
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==About this Structure==
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==Binding of two substrate analogue molecules to dihydroflavonol 4-reductase alters the functional geometry of the catalytic site==
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3C1T is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vitis_vinifera Vitis vinifera] with <scene name='pdbligand=NAP:'>NAP</scene> and <scene name='pdbligand=MYC:'>MYC</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Dihydrokaempferol_4-reductase Dihydrokaempferol 4-reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.219 1.1.1.219] Known structural/functional Sites: <scene name='pdbsite=AC1:Nap+Binding+Site+For+Residue+A+340'>AC1</scene>, <scene name='pdbsite=AC2:Myc+Binding+Site+For+Residue+A+341'>AC2</scene>, <scene name='pdbsite=AC3:Myc+Binding+Site+For+Residue+A+342'>AC3</scene>, <scene name='pdbsite=AC4:Nap+Binding+Site+For+Residue+B+340'>AC4</scene>, <scene name='pdbsite=AC5:Myc+Binding+Site+For+Residue+B+341'>AC5</scene>, <scene name='pdbsite=AC6:Myc+Binding+Site+For+Residue+B+342'>AC6</scene>, <scene name='pdbsite=AC7:Nap+Binding+Site+For+Residue+C+340'>AC7</scene>, <scene name='pdbsite=AC8:Myc+Binding+Site+For+Residue+C+341'>AC8</scene>, <scene name='pdbsite=AC9:Myc+Binding+Site+For+Residue+C+342'>AC9</scene>, <scene name='pdbsite=BC1:Nap+Binding+Site+For+Residue+D+340'>BC1</scene>, <scene name='pdbsite=BC2:Myc+Binding+Site+For+Residue+D+341'>BC2</scene> and <scene name='pdbsite=BC3:Myc+Binding+Site+For+Residue+D+342'>BC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C1T OCA].
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<StructureSection load='3c1t' size='340' side='right'caption='[[3c1t]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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[[Category: Dihydrokaempferol 4-reductase]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[3c1t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vitis_vinifera Vitis vinifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C1T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C1T FirstGlance]. <br>
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[[Category: Vitis vinifera]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.252&#8491;</td></tr>
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[[Category: Delrot, S.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MYC:3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE'>MYC</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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[[Category: Estaintot, B Langlois d.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c1t OCA], [https://pdbe.org/3c1t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c1t RCSB], [https://www.ebi.ac.uk/pdbsum/3c1t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c1t ProSAT]</span></td></tr>
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[[Category: Gallois, B.]]
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</table>
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[[Category: Granier, T.]]
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== Function ==
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[[Category: Petit, P.]]
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[https://www.uniprot.org/uniprot/DFRA_VITVI DFRA_VITVI] Bifunctional enzyme involved in flavonoid metabolism.[UniProtKB:Q9XES5]
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[[Category: Trabelsi, N.]]
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== Evolutionary Conservation ==
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[[Category: MYC]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: NAP]]
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Check<jmol>
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[[Category: flavonoids]]
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<jmolCheckbox>
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[[Category: oxidoreductase]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c1/3c1t_consurf.spt"</scriptWhenChecked>
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[[Category: rossmann fold]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: short chain dehydrogenase reductase]]
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c1t ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Dihydroflavonol 4-reductase (DFR) is a key enzyme of the flavonoid biosynthesis pathway which catalyses the NADPH-dependent reduction of 2R,3R-trans-dihydroflavonols to leucoanthocyanidins. The latter are the precursors of anthocyans and condensed tannins, two major classes of phenolic compounds that strongly influence the organoleptic properties of wine. DFR has been investigated in many plant species, but little was known about its structural properties until the three-dimensional structure of the Vitis vinifera enzyme complexed with NADP(+) and its natural substrate dihydroquercetin (DHQ) was described. In the course of the study of substrate specificity, crystals of DFR-NADP(+)-flavonol (myricetin and quercetin) complexes were obtained. Their structures exhibit major changes with respect to that of the abortive DFR-NADP(+)-DHQ complex. Two flavonol molecules bind to the catalytic site in a stacking arrangement and alter its geometry, which becomes incompatible with enzymatic activity. The X-ray structures of both DFR-NADP(+)-myricetin and DFR-NADP(+)-quercetin are reported together with preliminary spectroscopic data. The results suggest that flavonols could be inhibitors of the activity of DFR towards dihydroflavonols.
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:13 2008''
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Structural evidence for the inhibition of grape dihydroflavonol 4-reductase by flavonols.,Trabelsi N, Petit P, Manigand C, Langlois d'Estaintot B, Granier T, Chaudiere J, Gallois B Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):883-91. Epub 2008, Jul 17. PMID:18645237<ref>PMID:18645237</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3c1t" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Vitis vinifera]]
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[[Category: Delrot S]]
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[[Category: Gallois B]]
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[[Category: Granier T]]
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[[Category: Langlois d'Estaintot B]]
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[[Category: Petit P]]
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[[Category: Trabelsi N]]

Current revision

Binding of two substrate analogue molecules to dihydroflavonol 4-reductase alters the functional geometry of the catalytic site

PDB ID 3c1t

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