This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c5p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3c5p" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c5p, resolution 2.90&Aring;" /> '''Crystal structure of...)
Current revision (07:44, 27 January 2022) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c5p.jpg|left|200px]]<br /><applet load="3c5p" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3c5p, resolution 2.90&Aring;" />
 
-
'''Crystal structure of BAS0735, a protein of unknown function from Bacillus anthracis str. Sterne'''<br />
 
-
==About this Structure==
+
==Crystal structure of BAS0735, a protein of unknown function from Bacillus anthracis str. Sterne==
-
3C5P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._sterne Bacillus anthracis str. sterne] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+301'>AC1</scene>, <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+B+302'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Residue+B+301'>AC3</scene>, <scene name='pdbsite=AC4:Mg+Binding+Site+For+Residue+C+302'>AC4</scene>, <scene name='pdbsite=AC5:Mg+Binding+Site+For+Residue+C+301'>AC5</scene>, <scene name='pdbsite=AC6:Mg+Binding+Site+For+Residue+D+302'>AC6</scene>, <scene name='pdbsite=AC7:Mg+Binding+Site+For+Residue+D+301'>AC7</scene>, <scene name='pdbsite=AC8:Mg+Binding+Site+For+Residue+F+302'>AC8</scene>, <scene name='pdbsite=AC9:Mg+Binding+Site+For+Residue+F+301'>AC9</scene>, <scene name='pdbsite=BC1:Mg+Binding+Site+For+Residue+E+302'>BC1</scene>, <scene name='pdbsite=BC2:Mg+Binding+Site+For+Residue+E+301'>BC2</scene> and <scene name='pdbsite=BC3:Mg+Binding+Site+For+Residue+A+302'>BC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5P OCA].
+
<StructureSection load='3c5p' size='340' side='right'caption='[[3c5p]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
[[Category: Bacillus anthracis str. sterne]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3c5p]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_(strain_sterne) Bacillus anthracis (strain sterne)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5P FirstGlance]. <br>
-
[[Category: Gornicki, P.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Joachimiak, G.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BAS0735, BA_0772, GBAA0772 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=260799 Bacillus anthracis (strain Sterne)])</td></tr>
-
[[Category: Kim, Y.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5p OCA], [https://pdbe.org/3c5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5p RCSB], [https://www.ebi.ac.uk/pdbsum/3c5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5p ProSAT], [https://www.topsan.org/Proteins/MCSG/3c5p TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</table>
-
[[Category: MG]]
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5p_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c5p ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Gornicki, P]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Joachimiak, G]]
 +
[[Category: Kim, Y]]
 +
[[Category: Structural genomic]]
[[Category: 2-layer beta-sheet]]
[[Category: 2-layer beta-sheet]]
-
[[Category: mcsg]]
+
[[Category: Mcsg]]
-
[[Category: midwest center for structural genomics]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: protein structure initiative]]
+
[[Category: Unknown function]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomics]]
+
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:28 2008''
+

Current revision

Crystal structure of BAS0735, a protein of unknown function from Bacillus anthracis str. Sterne

PDB ID 3c5p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools