This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c8l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:29, 1 February 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c8l.jpg|left|200px]]<br /><applet load="3c8l" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3c8l, resolution 1.220&Aring;" />
 
-
'''Crystal structure of FtsZ-like protein of unknown function (ZP_00109722.1) from Nostoc punctiforme PCC 73102 at 1.22 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of a ftsz-like protein of unknown function (npun_r1471) from nostoc punctiforme pcc 73102 at 1.22 A resolution==
-
3C8L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Nostoc_punctiforme_pcc_73102 Nostoc punctiforme pcc 73102] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=IMD:'>IMD</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+122'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+B+122'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+123'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+B+123'>AC4</scene>, <scene name='pdbsite=AC5:Cl+Binding+Site+For+Residue+B+124'>AC5</scene>, <scene name='pdbsite=AC6:Cl+Binding+Site+For+Residue+A+124'>AC6</scene>, <scene name='pdbsite=AC7:Imd+Binding+Site+For+Residue+A+125'>AC7</scene>, <scene name='pdbsite=AC8:Imd+Binding+Site+For+Residue+B+125'>AC8</scene>, <scene name='pdbsite=AC9:Gol+Binding+Site+For+Residue+B+126'>AC9</scene> and <scene name='pdbsite=BC1:Gol+Binding+Site+For+Residue+A+126'>BC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8L OCA].
+
<StructureSection load='3c8l' size='340' side='right'caption='[[3c8l]], [[Resolution|resolution]] 1.22&Aring;' scene=''>
-
[[Category: Nostoc punctiforme pcc 73102]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3c8l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_punctiforme_PCC_73102 Nostoc punctiforme PCC 73102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C8L FirstGlance]. <br>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: CL]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c8l OCA], [https://pdbe.org/3c8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c8l RCSB], [https://www.ebi.ac.uk/pdbsum/3c8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c8l ProSAT], [https://www.topsan.org/Proteins/JCSG/3c8l TOPSAN]</span></td></tr>
-
[[Category: GOL]]
+
</table>
-
[[Category: IMD]]
+
== Evolutionary Conservation ==
-
[[Category: SO4]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: conserved hypothetical protein (lin0512_fam)]]
+
Check<jmol>
-
[[Category: ftsz-like protein of unknown function]]
+
<jmolCheckbox>
-
[[Category: jcsg]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c8l_consurf.spt"</scriptWhenChecked>
-
[[Category: joint center for structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: psi-2]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c8l ConSurf].
-
[[Category: unknown function]]
+
<div style="clear:both"></div>
-
[[Category: zp_00109722 1]]
+
__TOC__
-
 
+
</StructureSection>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:40 2008''
+
[[Category: Large Structures]]
 +
[[Category: Nostoc punctiforme PCC 73102]]

Current revision

Crystal structure of a ftsz-like protein of unknown function (npun_r1471) from nostoc punctiforme pcc 73102 at 1.22 A resolution

PDB ID 3c8l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3c8l"
Personal tools