4prf
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 4prf is ON HOLD Authors: Kapral, G.J., Jain, S., Noeske, J., Doudna, J.A., Richardson, D.C., Richardson, J.S. Description: A Second Look at the HDV...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==A Second Look at the HDV Ribozyme Structure and Dynamics.== | |
| + | <StructureSection load='4prf' size='340' side='right'caption='[[4prf]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4prf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vc7 1vc7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PRF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PRF FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.395Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4prf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4prf OCA], [https://pdbe.org/4prf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4prf RCSB], [https://www.ebi.ac.uk/pdbsum/4prf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4prf ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/SNRPA_HUMAN SNRPA_HUMAN] Binds stem loop II of U1 snRNA. It is the first snRNP to interact with pre-mRNA. This interaction is required for the subsequent binding of U2 snRNP and the U4/U6/U5 tri-snRNP. In a snRNP-free form (SF-A) may be involved in coupled pre-mRNA splicing and polyadenylation process. Binds preferentially to the 5'-UGCAC-3' motif in vitro.<ref>PMID:9848648</ref> | ||
| - | + | ==See Also== | |
| - | + | *[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]] | |
| - | + | *[[Ribozyme 3D structures|Ribozyme 3D structures]] | |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Homo sapiens]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Doudna JA]] | ||
| + | [[Category: Jain S]] | ||
| + | [[Category: Kapral GJ]] | ||
| + | [[Category: Noeske J]] | ||
| + | [[Category: Richardson DC]] | ||
| + | [[Category: Richardson JS]] | ||
Current revision
A Second Look at the HDV Ribozyme Structure and Dynamics.
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