4b0n
From Proteopedia
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| - | {{STRUCTURE_4b0n| PDB=4b0n | SCENE= }} | ||
| - | ===Crystal strucutre of PKS-I from the brown algae Ectocarpus siliculosus=== | ||
| - | {{ABSTRACT_PUBMED_23983220}} | ||
| - | == | + | ==Crystal structure of PKS-I from the brown algae Ectocarpus siliculosus== |
| - | [[4b0n]] is a 2 chain structure with sequence from [ | + | <StructureSection load='4b0n' size='340' side='right'caption='[[4b0n]], [[Resolution|resolution]] 2.85Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4b0n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ectocarpus_siliculosus Ectocarpus siliculosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B0N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B0N FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACD:ARACHIDONIC+ACID'>ACD</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b0n OCA], [https://pdbe.org/4b0n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b0n RCSB], [https://www.ebi.ac.uk/pdbsum/4b0n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b0n ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/D8LJ35_ECTSI D8LJ35_ECTSI] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Brown algal phlorotannins are structural analogs of condensed tannins in terrestrial plants and like plant phenols, they have numerous biological functions. Despite their importance in brown algae, phlorotannin biosynthetic pathways have been poorly characterized at the molecular level. We found that a predicted type III polyketide synthase in the genome of the brown alga Ectocarpus siliculosus, PKS1, catalyzes a major step in the biosynthetic pathway of phlorotannins (i.e., the synthesis of phloroglucinol monomers from malonyl-CoA). The crystal structure of PKS1 at 2.85-A resolution provided a good quality electron density map showing a modified Cys residue, likely connected to a long chain acyl group. An additional pocket not found in other known type III PKSs contains a reaction product that might correspond to a phloroglucinol precursor. In vivo, we also found a positive correlation between the phloroglucinol content and the PKS III gene expression level in cells of a strain of Ectocarpus adapted to freshwater during its reacclimation to seawater. The evolution of the type III PKS gene family in Stramenopiles suggests a lateral gene transfer event from an actinobacterium. | ||
| - | + | Structure/Function Analysis of a Type III Polyketide Synthase in the Brown Alga Ectocarpus siliculosus Reveals a Biochemical Pathway in Phlorotannin Monomer Biosynthesis.,Meslet-Cladiere L, Delage L, J-J Leroux C, Goulitquer S, Leblanc C, Creis E, Gall EA, Stiger-Pouvreau V, Czjzek M, Potin P Plant Cell. 2013 Aug 27. PMID:23983220<ref>PMID:23983220</ref> | |
| - | <ref | + | |
| - | [[Category: | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 4b0n" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: Goulitquer | + | <references/> |
| - | [[Category: Leblanc | + | __TOC__ |
| - | [[Category: Leroux | + | </StructureSection> |
| - | [[Category: Meslet-Cladiere | + | [[Category: Ectocarpus siliculosus]] |
| - | [[Category: Potin | + | [[Category: Large Structures]] |
| - | [[Category: Stiger-Pouvreau | + | [[Category: Ar Gall E]] |
| - | + | [[Category: Czjzek M]] | |
| - | + | [[Category: Delage L]] | |
| - | + | [[Category: Goulitquer S]] | |
| + | [[Category: Leblanc C]] | ||
| + | [[Category: Leroux C]] | ||
| + | [[Category: Meslet-Cladiere L]] | ||
| + | [[Category: Potin P]] | ||
| + | [[Category: Stiger-Pouvreau V]] | ||
Current revision
Crystal structure of PKS-I from the brown algae Ectocarpus siliculosus
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