4i14
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| - | {{STRUCTURE_4i14| PDB=4i14 | SCENE= }} | ||
| - | ===Crystal Structure of Mtb-ribA2 (Rv1415)=== | ||
| - | {{ABSTRACT_PUBMED_23999287}} | ||
| - | == | + | ==Crystal Structure of Mtb-ribA2 (Rv1415)== |
| - | [[http://www.uniprot.org/uniprot/RIBBA_MYCTA RIBBA_MYCTA | + | <StructureSection load='4i14' size='340' side='right'caption='[[4i14]], [[Resolution|resolution]] 3.00Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4i14]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Ra Mycobacterium tuberculosis H37Ra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I14 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I14 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i14 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i14 OCA], [https://pdbe.org/4i14 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i14 RCSB], [https://www.ebi.ac.uk/pdbsum/4i14 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i14 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RIBBA_MYCTA RIBBA_MYCTA] Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (By similarity). Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate (By similarity). | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The enzymes 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBPS) and GTP cyclohydrolase II (GCHII) catalyze the initial steps of both branches of the bacterial riboflavin-biosynthesis pathway. The structures and molecular mechanisms of DHBPS and GCHII as separate polypeptides are known; however, their organization and molecular mechanism as a bifunctional enzyme are unknown to date. Here, the crystal structure of an essential bifunctional DHBPS/GCHII enzyme from Mycobacterium tuberculosis (Mtb-ribA2) is reported at 3.0 A resolution. The crystal structure revealed two conformationally different molecules of Mtb-ribA2 in the asymmetric unit that form a dimer via their GCHII domains. Interestingly, analysis of the crystal packing revealed a long `helical-like oligomer' formed by DHBPS and GCHII functional homodimers, thus generating an `open-ended' unit-cell lattice. However, size-exclusion chromatography studies suggest that Mtb-ribA2 exists as a dimer in solution. To understand the discrepancy between the oligomerization observed in solution and in the crystal structure, the DHBPS (Mtb-DHBPS) and GCHII (Mtb-GCHII) domains of Mtb-ribA2 have been cloned, expressed and purified as His-tagged proteins. Size-exclusion chromatography studies indicated that Mtb-GCHII is a dimer while Mtb-DHBPS exists as a monomer in solution. Moreover, kinetic studies revealed that the GCHII activities of Mtb-ribA2 and Mtb-GCHII are similar, while the DHBPS activity of Mtb-ribA2 is much higher than that of Mtb-DHBPS alone. Taken together, the results strongly suggest that Mtb-ribA2 exists as a dimer formed through its GCHII domains and requires full-length Mtb-ribA2 for optimal DHBPS activity. | ||
| - | + | The crystal structure reveals the molecular mechanism of bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (Rv1415) from Mycobacterium tuberculosis.,Singh M, Kumar P, Yadav S, Gautam R, Sharma N, Karthikeyan S Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1633-44. doi:, 10.1107/S0907444913011402. Epub 2013 Aug 15. PMID:23999287<ref>PMID:23999287</ref> | |
| - | + | ||
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | < | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 4i14" style="background-color:#fffaf0;"></div> |
| - | [[Category: Gautam | + | == References == |
| - | [[Category: Karthikeyan | + | <references/> |
| - | [[Category: Kumar | + | __TOC__ |
| - | [[Category: Sharma | + | </StructureSection> |
| - | [[Category: Singh | + | [[Category: Large Structures]] |
| - | [[Category: Yadav | + | [[Category: Mycobacterium tuberculosis H37Ra]] |
| - | + | [[Category: Gautam R]] | |
| - | + | [[Category: Karthikeyan S]] | |
| - | + | [[Category: Kumar P]] | |
| - | + | [[Category: Sharma N]] | |
| - | + | [[Category: Singh M]] | |
| - | + | [[Category: Yadav S]] | |
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of Mtb-ribA2 (Rv1415)
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