User:James Bahng/sandbox 1

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== Structure of Fumarylacetoacetate Hydrolase with Phosphorus-based Inhibitor ==
== Structure of Fumarylacetoacetate Hydrolase with Phosphorus-based Inhibitor ==
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<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
 
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1HYO is an EC 3.7.1.2 hydrolase cleaving C-C bonds in ketone bodies.
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<StructureSection load='1hyo' size='340' side='right' caption='Fumarylacetoacetate Hydrolase' scene=''>
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1HYO is an [http://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=3.7.1 EC 3.7.1.2] hydrolase involved in the final step of the Phe/Tyr catabolic pathway, and <scene name='58/581360/Ligand_bound/1'>binds to Fumarylacetoacetate</scene> producing [[http://ec.asm.org/content/6/3/514/F1.large.jpg Fumarate and Acetoacetate]].
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The mechanism is not well understood, but is hypothesized that His-133 activates a nucleophilic water, which attacks the δ carbon, leading to cleavage<ref name=”1hyo”> Bateman, R.L., Bhanumoorthy, P., Witte, J.F., McClard, R.W., Grompe, M., Timm, D.E. (2001) Mechanistic Inferences from the Crystal Structure of Fumarylacetoacetate Hydrolase with a Bound
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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Phosphorus-based Inhibitor. Journal of Biological Chemistry, 207(18) 15284-15291
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</ref>. The resultant tetrahedral alkoxy transition state is thought to be stabilized by Arg-237, Gln-240, and Lys-253 residues. As with all of the EC 3.7.1 class enzymes, the key to the C-C cleavage is the metal ion that lines up with the carbon to be cleaved.
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== Function ==
 
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== Disease ==
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== Disease and Treatment ==
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Mutations in 1HYO are responsible for hereditary tyrosemia Type I, a serious metabolic disease resulting in chronic inflammation of the liver and neuronal damage<ref name="disease"> Grompe, M. (2001)The Pathophysiology and Treatment of Hereditary Tyrosinemia Type 1. Liver Diease, 21(4):563-572 DOI:10.1055/s-2001-19035</ref>. It is in the same metabolic pathway as Phenylketonuria (PKU) in infants, and is treated similarly with strict lifelong dietary control and pharmacological inhibition of [[http://ec.asm.org/content/6/3/514/F1.large.jpg Phenylalanine hydroxylase]], the key first enzyme in the degradation pathway.
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In very serious acute cases, double liver/kidney transplant may be considered as an option as well.
== Relevance ==
== Relevance ==
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== Structural highlights ==
== Structural highlights ==
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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FAH is a homodimer made up of two 46 kDa subunits. The subunits form a cavity <scene name='58/581360/Close_up_showing_metal_ions/2'>complementary in shape and charge to fumarylacetoacetate</scene><ref name=”1hyo”> Bateman, R.L., Bhanumoorthy, P., Witte, J.F., McClard, R.W., Grompe, M., Timm, D.E. (2001) Mechanistic Inferences from the Crystal Structure of Fumarylacetoacetate Hydrolase with a Bound
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Phosphorus-based Inhibitor. Journal of Biological Chemistry, 207(18) 15284-15291
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</ref>. The binding is coordinated by Ca2+, Arg and two Tyr. The active residues in are His-133, acting as a base to activate a water, and Arg-237, Gln-240 and Lys-253 acting to stabilize the tetrahedral alkoxy transition state.
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</StructureSection>
 
== References ==
== References ==
<references/>
<references/>

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Structure of Fumarylacetoacetate Hydrolase with Phosphorus-based Inhibitor

Fumarylacetoacetate Hydrolase

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