This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mb8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:46, 22 May 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3mb8| PDB=3mb8 | SCENE= }}
 
-
===Crystal structure of purine nucleoside phosphorylase from toxoplasma gondii in complex with immucillin-H===
 
-
{{ABSTRACT_PUBMED_24585883}}
 
-
==About this Structure==
+
==Crystal structure of purine nucleoside phosphorylase from toxoplasma gondii in complex with immucillin-H==
-
[[3mb8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Toxgo Toxgo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MB8 OCA].
+
<StructureSection load='3mb8' size='340' side='right'caption='[[3mb8]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3mb8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MB8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MB8 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMH:1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL'>IMH</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mb8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mb8 OCA], [https://pdbe.org/3mb8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mb8 RCSB], [https://www.ebi.ac.uk/pdbsum/3mb8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mb8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2HXR2_TOXGO Q2HXR2_TOXGO]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The intracellular pathogen Toxoplasma gondii is a purine auxotroph that relies on purine salvage for proliferation. We have optimized T. gondii purine nucleoside phosphorylase (TgPNP) stability and crystallized TgPNP with phosphate and Immucillin-H, a transition-state analogue that has high affinity for the enzyme. Immucillin-H bound to TgPNP with a dissociation constant of 370 pM, the highest affinity of eleven immucillins selected to probe the catalytic site. The specificity for transition-state analogues indicated an early dissociative transition state for TgPNP. Compared with PfPNP, large substituents surrounding the 5' -hydroxyl group of inhibitors demonstrate reduced capacity for TgPNP inhibition. Catalytic discrimination against large 5' groups is consistent with the inability of TgPNP to catalyze the phosphorylysis of 5' -methylthioinosine to hypoxanthine. In contrast to mammalian PNP, the 2' -hydroxyl group is crucial for inhibitor binding in the catalytic site of TgPNP. This first crystal structure of TgPNP describes the basis for discrimination against 5' -methylthioinosine and similarly 5' -hydroxy-substituted immucillins; structural differences reflect the unique adaptations of purine salvage pathways of Apicomplexa.
-
==See Also==
+
INHIBITION AND STRUCTURE OF TOXOPLASMA GONDII PURINE NUCLEOSIDE PHOSPHORYLASE.,Donaldson TM, Cassera MB, Ho MC, Zhan C, Merino EF, Evans GB, Tyler PC, Almo SC, Schramm VL, Kim K Eukaryot Cell. 2014 Feb 28. PMID:24585883<ref>PMID:24585883</ref>
-
*[[Purine nucleoside phosphorylase|Purine nucleoside phosphorylase]]
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:024585883</ref><references group="xtra"/><references/>
+
</div>
-
[[Category: Purine-nucleoside phosphorylase]]
+
<div class="pdbe-citations 3mb8" style="background-color:#fffaf0;"></div>
-
[[Category: Toxgo]]
+
 
-
[[Category: Almo, S C.]]
+
==See Also==
-
[[Category: Ho, M.]]
+
*[[Purine nucleoside phosphorylase 3D structures|Purine nucleoside phosphorylase 3D structures]]
-
[[Category: Schramm, V L.]]
+
== References ==
-
[[Category: Immh]]
+
<references/>
-
[[Category: Immucillin h]]
+
__TOC__
-
[[Category: Pnp]]
+
</StructureSection>
-
[[Category: Purine nucleoside phosphorylase]]
+
[[Category: Large Structures]]
-
[[Category: Transferase]]
+
[[Category: Toxoplasma gondii]]
 +
[[Category: Almo SC]]
 +
[[Category: Ho M]]
 +
[[Category: Schramm VL]]

Current revision

Crystal structure of purine nucleoside phosphorylase from toxoplasma gondii in complex with immucillin-H

PDB ID 3mb8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools