4p76
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Cellular response to a crystal-forming protein== | |
+ | <StructureSection load='4p76' size='340' side='right'caption='[[4p76]], [[Resolution|resolution]] 2.90Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4p76]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dipsastraea_favus Dipsastraea favus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P76 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P76 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CR8:2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE'>CR8</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p76 OCA], [https://pdbe.org/4p76 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p76 RCSB], [https://www.ebi.ac.uk/pdbsum/4p76 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p76 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q53UG8_DIPFA Q53UG8_DIPFA] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Crystallization of proteins may occur in the cytosol of a living cell, but how a cell responds to intracellular protein crystallization remains unknown. We developed a variant of coral fluorescent protein that forms diffraction-quality crystals within mammalian cells. This expression system allowed the direct determination of its crystal structure at 2.9 A, as well as observation of the crystallization process and cellular responses. The micron-sized crystal, which emerged rapidly, was a pure assembly of properly folded beta-barrels and was recognized as an autophagic cargo that was transferred to lysosomes via a process involving p62 and LC3. Several lines of evidence indicated that autophagy was not required for crystal nucleation or growth. These findings demonstrate that in vivo protein crystals can provide an experimental model to study chemical catalysis. This knowledge may be beneficial for structural biology studies on normal and disease-related protein aggregation. | ||
- | + | A diffraction-quality protein crystal processed as an autophagic cargo.,Tsutsui H, Jinno Y, Shoda K, Tomita A, Matsuda M, Yamashita E, Katayama H, Nakagawa A, Miyawaki A Mol Cell. 2015 Apr 2;58(1):186-93. doi: 10.1016/j.molcel.2015.02.007. Epub 2015, Mar 12. PMID:25773597<ref>PMID:25773597</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
+ | </div> | ||
+ | <div class="pdbe-citations 4p76" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Dipsastraea favus]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Jinno Y]] | ||
+ | [[Category: Katayama H]] | ||
+ | [[Category: Matsuda M]] | ||
+ | [[Category: Miyawaki A]] | ||
+ | [[Category: Nakagawa A]] | ||
+ | [[Category: Shoda K]] | ||
+ | [[Category: Tomita A]] | ||
+ | [[Category: Tsutsui H]] | ||
+ | [[Category: Yamashita E]] |
Current revision
Cellular response to a crystal-forming protein
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Categories: Dipsastraea favus | Large Structures | Jinno Y | Katayama H | Matsuda M | Miyawaki A | Nakagawa A | Shoda K | Tomita A | Tsutsui H | Yamashita E