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4p7x

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(New page: '''Unreleased structure''' The entry 4p7x is ON HOLD Authors: Shomura, Y., Koketsu, K., Moriwaki, K., Hayashi, M., Mitsuhashi, S., Hara, R., Kino, K., Higuchi, Y. Description: L-pipeco...)
Current revision (00:41, 28 December 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 4p7x is ON HOLD
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==L-pipecolic acid-bound L-proline cis-4-hydroxylase==
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<StructureSection load='4p7x' size='340' side='right'caption='[[4p7x]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4p7x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesorhizobium_japonicum_MAFF_303099 Mesorhizobium japonicum MAFF 303099]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P7X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P7X FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC+ACID'>CXS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YCP:(2S)-PIPERIDINE-2-CARBOXYLIC+ACID'>YCP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p7x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p7x OCA], [https://pdbe.org/4p7x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p7x RCSB], [https://www.ebi.ac.uk/pdbsum/4p7x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p7x ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/P4H_RHILO P4H_RHILO] Dioxygenase that catalyzes the 2-oxoglutarate-dependent selective hydroxylation of free L-proline to cis-4-hydroxy-L-proline (cis-4-Hyp).<ref>PMID:19133227</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Enzymatic regio- and stereoselective hydroxylation are valuable for the production of hydroxylated chiral ingredients. Proline hydroxylases are representative members of the nonheme Fe2+/alpha-ketoglutarate-dependent dioxygenase family. These enzymes catalyze the conversion of l-proline into hydroxy-l-prolines (Hyps). l-Proline cis-4-hydroxylases (cis-P4Hs) from Sinorhizobium meliloti and Mesorhizobium loti catalyze the hydroxylation of l-proline, generating cis-4-hydroxy-l-proline, as well as the hydroxylation of l-pipecolic acid (l-Pip), generating two regioisomers, cis-5-Hypip and cis-3-Hypip. To selectively produce cis-5-Hypip without simultaneous production of two isomers, protein engineering of cis-P4Hs is required. We therefore carried out protein engineering of cis-P4H to facilitate the conversion of the majority of l-Pip into the cis-5-Hypip isomer. We first solved the X-ray crystal structure of cis-P4H in complex with each of l-Pro and l-Pip. Then, we conducted three rounds of directed evolution and successfully created a cis-P4H triple mutant, V97F/V95W/E114G, demonstrating the desired regioselectivity toward cis-5-Hypip.
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Authors: Shomura, Y., Koketsu, K., Moriwaki, K., Hayashi, M., Mitsuhashi, S., Hara, R., Kino, K., Higuchi, Y.
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Refined Regio- and Stereoselective Hydroxylation of l-Pipecolic Acid by Protein Engineering of l-Proline cis-4-Hydroxylase Based on the X-ray Crystal Structure.,Koketsu K, Shomura Y, Moriwaki K, Hayashi M, Mitsuhashi S, Hara R, Kino K, Higuchi Y ACS Synth Biol. 2014 Sep 5. PMID:25171735<ref>PMID:25171735</ref>
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Description: L-pipecolic acid-bound L-proline cis-4-hydroxylase
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4p7x" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Hydroxylases 3D structures|Hydroxylases 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mesorhizobium japonicum MAFF 303099]]
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[[Category: Hara R]]
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[[Category: Hayashi M]]
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[[Category: Higuchi Y]]
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[[Category: Kino K]]
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[[Category: Koketsu K]]
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[[Category: Mitsuhashi S]]
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[[Category: Moriwaki K]]
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[[Category: Shomura Y]]

Current revision

L-pipecolic acid-bound L-proline cis-4-hydroxylase

PDB ID 4p7x

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