4ohf

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{{STRUCTURE_4ohf| PDB=4ohf | SCENE= }}
 
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===Crystal structure of cytosolic nucleotidase II (LPG0095) in complex with GMP from Legionella pneumophila, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LGR1===
 
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{{ABSTRACT_PUBMED_24456211}}
 
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==About this Structure==
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==Crystal structure of cytosolic nucleotidase II (LPG0095) in complex with GMP from Legionella pneumophila, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LGR1==
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[[4ohf]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OHF OCA].
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<StructureSection load='4ohf' size='340' side='right'caption='[[4ohf]], [[Resolution|resolution]] 2.53&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ohf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OHF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.53&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ohf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ohf OCA], [https://pdbe.org/4ohf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ohf RCSB], [https://www.ebi.ac.uk/pdbsum/4ohf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ohf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q5ZZB6_LEGPH Q5ZZB6_LEGPH]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cytosolic nucleotidase II (cN-II) from Legionella pneumophila (Lp) catalyzes the hydrolysis of GMP and dGMP displaying sigmoidal curves, whereas catalysis of IMP hydrolysis displayed a biphasic curve in the initial rate versus substrate concentration plots. Allosteric modulators of mammalian cN-II did not activate LpcN-II although GTP, GDP and the substrate GMP were specific activators. Crystal structures of the tetrameric LpcN-II revealed an activator-binding site at the dimer interface. A double mutation in this allosteric-binding site abolished activation, confirming the structural observations. The substrate GMP acting as an activator, partitioning between the allosteric and active site, is the basis for the sigmoidicity of the initial velocity versus GMP concentration plot. The LpcN-II tetramer showed differences in subunit organization upon activator binding that are absent in the activator-bound human cN-II structure. This is the first observation of a structural change induced by activator binding in cN-II that may be the molecular mechanism for enzyme activation. DATABASE: The coordinates and structure factors reported in this paper have been submitted to the Protein Data Bank under the accession numbers 2BDE and 4G63. The accession number of GMP complexed LpcN-II is 4OHF.
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==Reference==
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Allosteric regulation and substrate activation in cytosolic nucleotidase II from Legionella pneumophila.,Srinivasan B, Forouhar F, Shukla A, Sampangi C, Kulkarni S, Abashidze M, Seetharaman J, Lew S, Mao L, Acton TB, Xiao R, Everett JK, Montelione GT, Tong L, Balaram H FEBS J. 2014 Jan 24. doi: 10.1111/febs.12727. PMID:24456211<ref>PMID:24456211</ref>
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<ref group="xtra">PMID:024456211</ref><references group="xtra"/><references/>
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[[Category: Abashidze, M.]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Acton, T B.]]
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</div>
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[[Category: Balaram, H.]]
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<div class="pdbe-citations 4ohf" style="background-color:#fffaf0;"></div>
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[[Category: Everett, J K.]]
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== References ==
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[[Category: Forouhar, F.]]
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<references/>
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[[Category: Kulkarni, S.]]
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__TOC__
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[[Category: Lew, S.]]
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</StructureSection>
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[[Category: Mao, L.]]
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[[Category: Large Structures]]
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[[Category: Montelione, G M.]]
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[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Abashidze M]]
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[[Category: Sampangi, C.]]
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[[Category: Acton TB]]
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[[Category: Seetharaman, J.]]
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[[Category: Balaram H]]
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[[Category: Shukla, A.]]
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[[Category: Everett JK]]
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[[Category: Srinivisan, B.]]
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[[Category: Forouhar F]]
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[[Category: Tong, L.]]
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[[Category: Kulkarni S]]
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[[Category: Xiao, R.]]
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[[Category: Lew S]]
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[[Category: 3-domained structure that resembles had]]
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[[Category: Mao L]]
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[[Category: Cytosol]]
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[[Category: Montelione GM]]
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[[Category: Hydrolase]]
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[[Category: Sampangi C]]
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[[Category: Nesg]]
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[[Category: Seetharaman J]]
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[[Category: Northeast structural genomics consortium]]
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[[Category: Shukla A]]
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[[Category: Nucleotidase. it catalyzes the breakdown of selected nucleoside monophosphate]]
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[[Category: Srinivisan B]]
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[[Category: Psi-biology]]
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[[Category: Tong L]]
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[[Category: Structural genomic]]
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[[Category: Xiao R]]

Current revision

Crystal structure of cytosolic nucleotidase II (LPG0095) in complex with GMP from Legionella pneumophila, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LGR1

PDB ID 4ohf

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