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4ouo

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{{STRUCTURE_4ouo| PDB=4ouo | SCENE= }}
 
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===anti-Bla g 1 scFv===
 
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{{ABSTRACT_PUBMED_24667070}}
 
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==About this Structure==
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==anti-Bla g 1 scFv==
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[[4ouo]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OUO OCA].
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<StructureSection load='4ouo' size='340' side='right'caption='[[4ouo]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ouo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OUO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OUO FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ouo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ouo OCA], [https://pdbe.org/4ouo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ouo RCSB], [https://www.ebi.ac.uk/pdbsum/4ouo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ouo ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bla g 1 is a major allergen from Blatella germanica and one of the primary allergens used to assess cockroach allergen exposure. The epitope of an anti-Bla g 1 scFv was mapped in order to better understand cross reactivity with other group 1 cockroach allergens and patient IgE epitopes. X-ray crystallography was used to determine the structure of the scFv. The scFv epitope on Bla g 1 was located by alanine scanning site-directed mutagenesis and ELISA. Twenty-six rBla g 1-GST alanine mutants were evaluated for variations in binding to the scFv compared to the wild type allergen. Six mutants showed a significant difference in scFv binding affinity. These mutations clustered to form a discontinuous epitope mainly comprising two helices of Bla g 1. The allergen-scFv complex was modeled based on the results, and the epitope region was found to have low sequence similarity with Per a 1, especially among the residues identified as functionally important for the scFv binding to Bla g 1. Indeed, the scFv failed to bind Per a 1 in American cockroach extract. The scFv was unable to inhibit the binding of IgE antibodies from a highly cockroach allergic patient to Bla g 1. Based on the surface area of Bla g 1 occluded by the scFv, putative regions of patient IgE-Bla g 1 interactions can be inferred. This scFv could be best utilized as a capture antibody in an IgE detection ELISA, or to differentiate Bla g 1 from Per a 1 in environmental exposure assays.
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==Reference==
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Characterization of an anti-Bla g 1 scFv: Epitope mapping and cross-reactivity.,Mueller GA, Ankney JA, Glesner J, Khurana T, Edwards LL, Pedersen LC, Perera L, Slater JE, Pomes A, London RE Mol Immunol. 2014 Jun;59(2):200-7. doi: 10.1016/j.molimm.2014.02.003. Epub 2014, Mar 22. PMID:24667070<ref>PMID:24667070</ref>
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<ref group="xtra">PMID:024667070</ref><references group="xtra"/><references/>
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[[Category: Ankney, J A.]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Edwards, L L.]]
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</div>
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[[Category: Glesner, J.]]
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<div class="pdbe-citations 4ouo" style="background-color:#fffaf0;"></div>
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[[Category: Khurana, T.]]
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[[Category: London, R E.]]
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==See Also==
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[[Category: Mueller, G A.]]
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*[[Antibody 3D structures|Antibody 3D structures]]
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[[Category: Pedersen, L C.]]
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
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[[Category: Perera, L.]]
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*[[3D structures of non-human antibody|3D structures of non-human antibody]]
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[[Category: Pomes, A.]]
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== References ==
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[[Category: Slater, J E.]]
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<references/>
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[[Category: Bla g 1]]
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__TOC__
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[[Category: Cockroach allergen]]
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</StructureSection>
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[[Category: Igg]]
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[[Category: Gallus gallus]]
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[[Category: Immune system]]
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[[Category: Large Structures]]
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[[Category: Scfv antibody fragment]]
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[[Category: Ankney JA]]
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[[Category: Edwards LL]]
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[[Category: Glesner J]]
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[[Category: Khurana T]]
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[[Category: London RE]]
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[[Category: Mueller GA]]
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[[Category: Pedersen LC]]
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[[Category: Perera L]]
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[[Category: Pomes A]]
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[[Category: Slater JE]]

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anti-Bla g 1 scFv

PDB ID 4ouo

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