2rml

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(New page: 200px<br /><applet load="2rml" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rml" /> '''Solution structure of the N-terminal soluble...)
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[[Image:2rml.jpg|left|200px]]<br /><applet load="2rml" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2rml" />
 
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'''Solution structure of the N-terminal soluble domains of Bacillus subtilis CopA'''<br />
 
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==Overview==
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==Solution structure of the N-terminal soluble domains of Bacillus subtilis CopA==
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CopA, a P-type ATPase from Bacillus subtilis, plays a major role in the resistance of the cell to copper by effecting the export of the metal across the cytoplasmic membrane. The N-terminus of the protein features two soluble domains (a and b), that each contain a Cu(I)-binding motif, MTCAAC. We have generated a stable form of the wild-type two domain protein, CopAab, and determined its solution structure. This was found to be similar to that reported previously for a higher stability S46V variant, with minor differences mostly confined to the Ser46-containing beta3 strand of domain (a). Chemical shift analysis demonstrated that the two Cu(I)-binding motifs, located at different ends of the protein molecule, are both able to participate in Cu(I)-binding, and that Cu(I) is in rapid exchange between protein molecules. Surprisingly, UV-visible and fluorescence spectroscopy indicate very different modes of Cu(I)-binding below and above a level of 1 Cu(I) per protein, consistent with a major structural change occurring above 1 Cu(I)/CopAab. Analytical equilibrium centrifugation and gel filtration data show that this is a result of Cu(I)-mediated dimerization of the protein. The resulting species is highly luminescent, indicating the presence of a solvent-shielded Cu(I)-cluster.
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<StructureSection load='2rml' size='340' side='right'caption='[[2rml]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2rml]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RML FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rml OCA], [https://pdbe.org/2rml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rml RCSB], [https://www.ebi.ac.uk/pdbsum/2rml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rml ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/COPA_BACSU COPA_BACSU] Involved in copper export.<ref>PMID:12644235</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/2rml_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rml ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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CopA, a P-type ATPase from Bacillus subtilis, plays a major role in the resistance of the cell to copper by effecting the export of the metal across the cytoplasmic membrane. The N-terminus of the protein features two soluble domains (a and b), that each contain a Cu(I)-binding motif, MTCAAC. We have generated a stable form of the wild-type two-domain protein, CopAab, and determined its solution structure. This was found to be similar to that reported previously for a higher stability S46V variant, with minor differences mostly confined to the Ser(46)-containing beta3-strand of domain a. Chemical-shift analysis demonstrated that the two Cu(I)-binding motifs, located at different ends of the protein molecule, are both able to participate in Cu(I) binding and that Cu(I) is in rapid exchange between protein molecules. Surprisingly, UV-visible and fluorescence spectroscopy indicate very different modes of Cu(I) binding below and above a level of 1 Cu(I) per protein, consistent with a major structural change occurring above 1 Cu(I) per CopAab. Analytical equilibrium centrifugation and gel filtration results show that this is a result of Cu(I)-mediated dimerization of the protein. The resulting species is highly luminescent, indicating the presence of a solvent-shielded Cu(I) cluster.
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==About this Structure==
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Structure and Cu(I)-binding properties of the N-terminal soluble domains of Bacillus subtilis CopA.,Singleton C, Banci L, Ciofi-Baffoni S, Tenori L, Kihlken MA, Boetzel R, Le Brun NE Biochem J. 2008 May 1;411(3):571-9. PMID:18215122<ref>PMID:18215122</ref>
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2RML is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RML OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure and Cu(I)-binding properties of the N-terminal soluble domains of Bacillus subtilis CopA., Singleton C, Banci L, Ciofi-Baffoni S, Tenori L, Kihlken M, Boetzel R, Le Brun N, Biochem J. 2008 Jan 23;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18215122 18215122]
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</div>
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[[Category: Bacillus subtilis]]
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<div class="pdbe-citations 2rml" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Banci, L.]]
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[[Category: Bertini, I.]]
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[[Category: Boetzel, R.]]
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[[Category: Brun, N E.Le.]]
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[[Category: Ciofi-Baffoni, S.]]
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[[Category: Kihlken, M A.]]
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[[Category: Singleton, C.]]
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[[Category: Tenori, L.]]
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[[Category: atp-binding]]
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[[Category: copa]]
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[[Category: copper]]
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[[Category: copper transport]]
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[[Category: hydrolase]]
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[[Category: ion transport]]
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[[Category: magnesium]]
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[[Category: membrane]]
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[[Category: metal-binding]]
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[[Category: nucleotide-binding]]
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[[Category: p-type atpase]]
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[[Category: phosphorylation]]
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[[Category: transmembrane]]
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[[Category: transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 27 07:59:27 2008''
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==See Also==
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*[[ATPase 3D structures|ATPase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Bacillus subtilis]]
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[[Category: Large Structures]]
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[[Category: Banci L]]
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[[Category: Bertini I]]
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[[Category: Boetzel R]]
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[[Category: Ciofi-Baffoni S]]
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[[Category: Kihlken MA]]
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[[Category: Le Brun NE]]
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[[Category: Singleton C]]
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[[Category: Tenori L]]

Current revision

Solution structure of the N-terminal soluble domains of Bacillus subtilis CopA

PDB ID 2rml

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