3wkz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:13, 8 November 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3wkz| PDB=3wkz | SCENE= }}
 
-
===Crystal Structure of the Ostrinia furnacalis Group I Chitinase catalytic domain E148Q mutant===
 
-
==About this Structure==
+
==Crystal Structure of the Ostrinia furnacalis Group I Chitinase catalytic domain E148Q mutant==
-
[[3wkz]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WKZ OCA].
+
<StructureSection load='3wkz' size='340' side='right'caption='[[3wkz]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
[[Category: Chitinase]]
+
== Structural highlights ==
-
[[Category: Chen, L.]]
+
<table><tr><td colspan='2'>[[3wkz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ostrinia_furnacalis Ostrinia furnacalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WKZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WKZ FirstGlance]. <br>
-
[[Category: Chen, Q.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.001&#8491;</td></tr>
-
[[Category: Liu, T.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
[[Category: Shen, X.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wkz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wkz OCA], [https://pdbe.org/3wkz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wkz RCSB], [https://www.ebi.ac.uk/pdbsum/3wkz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wkz ProSAT]</span></td></tr>
-
[[Category: Yang, Q.]]
+
</table>
-
[[Category: Zhou, Y.]]
+
== Function ==
-
[[Category: Glycosyl hydrolase]]
+
[https://www.uniprot.org/uniprot/Q2V6H4_OSTFU Q2V6H4_OSTFU]
-
[[Category: Hydrolase]]
+
<div style="background-color:#fffaf0;">
-
[[Category: Insect]]
+
== Publication Abstract from PubMed ==
-
[[Category: Ostrinia furnacali]]
+
Insects possess a greater number of chitinases than any other organisms. This work is the first report of unliganded and oligosaccharide-complexed crystal structures of the insect chitinase OfChtI from Ostrinia furnacalis, which is essential to moulting. The obtained crystal structures were solved at resolutions between 1.7 and 2.2 A. A structural comparison with other chitinases revealed that OfChtI contains a long substrate-binding cleft similar to the bacterial chitinase SmChiB from Serratia marcescens. However, unlike the exo-acting SmChiB, which has a blocked and tunnel-like cleft, OfChtI possesses an open and groove-like cleft. The complexed structure of the catalytic domain of OfChtI (OfChtI-CAD) with (GlcNAc)2/3 indicates that the reducing sugar at subsite -1 is in an energetically unfavoured `boat' conformation, a state that possibly exists just before the completion of catalysis. Because OfChtI is known to act from nonreducing ends, (GlcNAc)3 would be a hydrolysis product of (GlcNAc)6, suggesting that OfChtI possesses an endo enzymatic activity. Furthermore, a hydrophobic plane composed of four surface-exposed aromatic residues is adjacent to the entrance to the substrate-binding cleft. Mutations of these residues greatly impair the chitin-binding activity, indicating that this hydrophobic plane endows OfChtI-CAD with the ability to anchor chitin. This work reveals the unique structural characteristics of an insect chitinase.
 +
 
 +
Structural characteristics of an insect group I chitinase, an enzyme indispensable to moulting.,Chen L, Liu T, Zhou Y, Chen Q, Shen X, Yang Q Acta Crystallogr D Biol Crystallogr. 2014 Apr 1;70(Pt 4):932-42. doi:, 10.1107/S1399004713033841. Epub 2014 Mar 19. PMID:24699639<ref>PMID:24699639</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3wkz" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Chitinase 3D structures|Chitinase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Ostrinia furnacalis]]
 +
[[Category: Chen L]]
 +
[[Category: Chen Q]]
 +
[[Category: Liu T]]
 +
[[Category: Shen X]]
 +
[[Category: Yang Q]]
 +
[[Category: Zhou Y]]

Current revision

Crystal Structure of the Ostrinia furnacalis Group I Chitinase catalytic domain E148Q mutant

PDB ID 3wkz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools