This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1bfd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:35, 7 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_1bfd| PDB=1bfd | SCENE= }}
 
-
===BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA===
 
-
{{ABSTRACT_PUBMED_9665697}}
 
-
==About this Structure==
+
==BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA==
-
[[1bfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BFD OCA].
+
<StructureSection load='1bfd' size='340' side='right'caption='[[1bfd]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Reference==
+
<table><tr><td colspan='2'>[[1bfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BFD FirstGlance]. <br>
-
<ref group="xtra">PMID:009665697</ref><references group="xtra"/><references/>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
[[Category: Benzoylformate decarboxylase]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bfd OCA], [https://pdbe.org/1bfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bfd RCSB], [https://www.ebi.ac.uk/pdbsum/1bfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bfd ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MDLC_PSEPU MDLC_PSEPU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/1bfd_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bfd ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pseudomonas putida]]
[[Category: Pseudomonas putida]]
-
[[Category: Gerlt, J A.]]
+
[[Category: Gerlt JA]]
-
[[Category: Hasson, M S.]]
+
[[Category: Hasson MS]]
-
[[Category: Kenyon, G L.]]
+
[[Category: Kenyon GL]]
-
[[Category: Mcleish, M J.]]
+
[[Category: Mcleish MJ]]
-
[[Category: Muscate, A.]]
+
[[Category: Muscate A]]
-
[[Category: Petsko, G A.]]
+
[[Category: Petsko GA]]
-
[[Category: Polovnikova, L S.]]
+
[[Category: Polovnikova LS]]
-
[[Category: Ringe, D.]]
+
[[Category: Ringe D]]
-
[[Category: Carbon-carbon]]
+
-
[[Category: Decarboxylase]]
+
-
[[Category: Lyase]]
+
-
[[Category: Mandelate catabolism]]
+
-
[[Category: Thiamin diphosphate]]
+

Current revision

BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA

PDB ID 1bfd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools