3c87

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3c87" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c87, resolution 2.17&Aring;" /> '''Crystal structure of...)
Current revision (05:43, 17 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c87.jpg|left|200px]]<br /><applet load="3c87" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3c87, resolution 2.17&Aring;" />
 
-
'''Crystal structure of the enterobactin esterase IroD from Shigella flexneri in the presence of enterobactin'''<br />
 
-
==About this Structure==
+
==Crystal structure of the enterobactin esterase FES from Shigella flexneri in the presence of enterobactin==
-
3C87 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457t Shigella flexneri 2a str. 2457t] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+A+501'>AC1</scene> and <scene name='pdbsite=AC2:Po4+Binding+Site+For+Residue+B+502'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C87 OCA].
+
<StructureSection load='3c87' size='340' side='right'caption='[[3c87]], [[Resolution|resolution]] 2.17&Aring;' scene=''>
-
[[Category: Shigella flexneri 2a str. 2457t]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3c87]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457T Shigella flexneri 2a str. 2457T]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C87 FirstGlance]. <br>
-
[[Category: Abergel, R.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.17&#8491;</td></tr>
-
[[Category: Holzle, D.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c87 OCA], [https://pdbe.org/3c87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c87 RCSB], [https://www.ebi.ac.uk/pdbsum/3c87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c87 ProSAT], [https://www.topsan.org/Proteins/MCSG/3c87 TOPSAN]</span></td></tr>
-
[[Category: Kim, Y.]]
+
</table>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
== Function ==
-
[[Category: Maltseva, N.]]
+
[https://www.uniprot.org/uniprot/A0A0H2VTI6_SHIFL A0A0H2VTI6_SHIFL]
-
[[Category: Raymond, K.]]
+
== Evolutionary Conservation ==
-
[[Category: NA]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: PO4]]
+
Check<jmol>
-
[[Category: alpha-beta-alpha sandwich]]
+
<jmolCheckbox>
-
[[Category: hydrolase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c87_consurf.spt"</scriptWhenChecked>
-
[[Category: irod]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: mcsg]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: midwest center for structural genomics]]
+
</jmolCheckbox>
-
[[Category: protein structure initiative]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c87 ConSurf].
-
[[Category: psi-2]]
+
<div style="clear:both"></div>
-
[[Category: siderophore]]
+
__TOC__
-
[[Category: structural genomics]]
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 27 08:00:13 2008''
+
[[Category: Shigella flexneri 2a str. 2457T]]
 +
[[Category: Abergel R]]
 +
[[Category: Holzle D]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Kim Y]]
 +
[[Category: Maltseva N]]
 +
[[Category: Raymond K]]

Current revision

Crystal structure of the enterobactin esterase FES from Shigella flexneri in the presence of enterobactin

PDB ID 3c87

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools