4o1r

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{{STRUCTURE_4o1r| PDB=4o1r | SCENE= }}
 
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===Crystal structure of NpuDnaB intein===
 
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{{ABSTRACT_PUBMED_24574026}}
 
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==About this Structure==
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==Crystal structure of NpuDnaB intein==
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[[4o1r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nosp7 Nosp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O1R OCA].
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<StructureSection load='4o1r' size='340' side='right'caption='[[4o1r]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4o1r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_punctiforme_PCC_73102 Nostoc punctiforme PCC 73102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O1R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o1r OCA], [https://pdbe.org/4o1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o1r RCSB], [https://www.ebi.ac.uk/pdbsum/4o1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o1r ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B2IVH9_NOSP7 B2IVH9_NOSP7]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Protein splicing is an autocatalytic process involving self-excision of an internal protein domain, the intein, and concomitant ligation of the two flanking sequences, the exteins, with a peptide bond. Protein splicing can also take place in trans by naturally split inteins or artificially split inteins, ligating the exteins on two different polypeptide chains into one polypeptide chain. Protein trans-splicing could work in foreign contexts by replacing the native extein sequences with other protein sequences. Protein ligation using protein trans-splicing increasingly becomes a useful tool for biotechnological applications such as semi-synthesis of proteins, segmental isotopic labeling, and in vivo protein engineering. However, only a few split inteins have been successfully applied for protein ligation. Naturally split inteins have been widely used, but they are cross-reactive to each other, limiting their applications to multiple-fragment ligation. Based on the three-dimensional structures including two newly determined intein structures, we derived 21 new split inteins from four highly efficient cis-splicing inteins, in order to develop novel split inteins suitable for protein ligation. We systematically compared trans-splicing of 24 split inteins and tested the cross-activities among them to identify orthogonal split intein fragments that could be used in chemical biology and biotechnological applications.
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==Reference==
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Structure-based engineering and comparison of novel split inteins for protein ligation.,Aranko AS, Oeemig JS, Zhou D, Kajander T, Wlodawer A, Iwai H Mol Biosyst. 2014 Feb 26. PMID:24574026<ref>PMID:24574026</ref>
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<ref group="xtra">PMID:024574026</ref><references group="xtra"/><references/>
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[[Category: Nosp7]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Aranko, A S.]]
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</div>
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[[Category: Iwai, H.]]
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<div class="pdbe-citations 4o1r" style="background-color:#fffaf0;"></div>
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[[Category: Kajander, T.]]
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== References ==
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[[Category: Oeemig, J S.]]
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<references/>
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[[Category: Wlodawer, A.]]
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__TOC__
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[[Category: Zhou, D.]]
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</StructureSection>
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[[Category: Splicing]]
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[[Category: Large Structures]]
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[[Category: Nostoc punctiforme PCC 73102]]
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[[Category: Aranko AS]]
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[[Category: Iwai H]]
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[[Category: Kajander T]]
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[[Category: Oeemig JS]]
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[[Category: Wlodawer A]]
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[[Category: Zhou D]]

Current revision

Crystal structure of NpuDnaB intein

PDB ID 4o1r

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