This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1okd
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_1okd| PDB=1okd | SCENE= }} | ||
| - | ===NMR-STRUCTURE OF TRYPAREDOXIN 1=== | ||
| - | {{ABSTRACT_PUBMED_14674746}} | ||
| - | == | + | ==NMR-structure of tryparedoxin 1== |
| - | [[1okd]] is a 1 chain structure with sequence from [ | + | <StructureSection load='1okd' size='340' side='right'caption='[[1okd]]' scene=''> |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[1okd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OKD FirstGlance]. <br> |
| - | < | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1okd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1okd OCA], [https://pdbe.org/1okd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1okd RCSB], [https://www.ebi.ac.uk/pdbsum/1okd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1okd ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/O96438_CRIFA O96438_CRIFA] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/1okd_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1okd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Crithidia fasciculata]] | [[Category: Crithidia fasciculata]] | ||
| - | [[Category: Budde | + | [[Category: Large Structures]] |
| - | [[Category: Flohe | + | [[Category: Budde H]] |
| - | [[Category: Hecht | + | [[Category: Flohe L]] |
| - | [[Category: Krumme | + | [[Category: Hecht H-J]] |
| - | [[Category: Menge | + | [[Category: Krumme D]] |
| - | [[Category: Ohlenschlager | + | [[Category: Menge U]] |
| - | [[Category: Ross | + | [[Category: Ohlenschlager O]] |
| - | [[Category: Wissing | + | [[Category: Ross A]] |
| - | [[Category: Wray | + | [[Category: Wissing J]] |
| - | + | [[Category: Wray V]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
NMR-structure of tryparedoxin 1
| |||||||||||
Categories: Crithidia fasciculata | Large Structures | Budde H | Flohe L | Hecht H-J | Krumme D | Menge U | Ohlenschlager O | Ross A | Wissing J | Wray V
