2qjt

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(New page: 200px<br /><applet load="2qjt" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qjt, resolution 2.300&Aring;" /> '''Crystal structure o...)
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[[Image:2qjt.jpg|left|200px]]<br /><applet load="2qjt" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2qjt, resolution 2.300&Aring;" />
 
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'''Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase complexed with AMP and MN ion from Francisella tularensis'''<br />
 
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==Overview==
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==Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase complexed with AMP and MN ion from Francisella tularensis==
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Bacterial NadM-Nudix is a bifunctional enzyme containing a nicotinamide mononucleotide (NMN) adenylyltransferase and an ADP-ribose (ADPR) pyrophosphatase domain. While most members of this enzyme family, such as that from a model cyanobacterium Synechocystis sp., are involved primarily in nicotinamide adenine dinucleotide (NAD) salvage/recycling pathways, its close homolog in a category-A biodefense pathogen, Francisella tularensis, likely plays a central role in a recently discovered novel pathway of NAD de novo synthesis. The crystal structures of NadM-Nudix from both species, including their complexes with various ligands and catalytic metal ions, revealed detailed configurations of the substrate binding and catalytic sites in both domains. The structure of the N-terminal NadM domain may be exploited for designing new antitularemia therapeutics. The ADPR binding site in the C-terminal Nudix domain is substantially different from that of Escherichia coli ADPR pyrophosphatase, and is more similar to human NUDT9. The latter observation provided new insights into the ligand binding mode of ADPR-gated Ca(2+) channel TRPM2.
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<StructureSection load='2qjt' size='340' side='right'caption='[[2qjt]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2qjt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Francisella_tularensis Francisella tularensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QJT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qjt OCA], [https://pdbe.org/2qjt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qjt RCSB], [https://www.ebi.ac.uk/pdbsum/2qjt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qjt ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qj/2qjt_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qjt ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bacterial NadM-Nudix is a bifunctional enzyme containing a nicotinamide mononucleotide (NMN) adenylyltransferase and an ADP-ribose (ADPR) pyrophosphatase domain. While most members of this enzyme family, such as that from a model cyanobacterium Synechocystis sp., are involved primarily in nicotinamide adenine dinucleotide (NAD) salvage/recycling pathways, its close homolog in a category-A biodefense pathogen, Francisella tularensis, likely plays a central role in a recently discovered novel pathway of NAD de novo synthesis. The crystal structures of NadM-Nudix from both species, including their complexes with various ligands and catalytic metal ions, revealed detailed configurations of the substrate binding and catalytic sites in both domains. The structure of the N-terminal NadM domain may be exploited for designing new antitularemia therapeutics. The ADPR binding site in the C-terminal Nudix domain is substantially different from that of Escherichia coli ADPR pyrophosphatase, and is more similar to human NUDT9. The latter observation provided new insights into the ligand binding mode of ADPR-gated Ca2+ channel TRPM2.
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==About this Structure==
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Bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase: structure and function in bacterial NAD metabolism.,Huang N, Sorci L, Zhang X, Brautigam CA, Li X, Raffaelli N, Magni G, Grishin NV, Osterman AL, Zhang H Structure. 2008 Feb;16(2):196-209. PMID:18275811<ref>PMID:18275811</ref>
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2QJT is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Francisella_tularensis Francisella tularensis] with <scene name='pdbligand=MN:'>MN</scene> and <scene name='pdbligand=AMP:'>AMP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mn+Binding+Site+For+Residue+A+501'>AC1</scene>, <scene name='pdbsite=AC2:Mn+Binding+Site+For+Residue+A+502'>AC2</scene>, <scene name='pdbsite=AC3:Mn+Binding+Site+For+Residue+A+503'>AC3</scene>, <scene name='pdbsite=AC4:Mn+Binding+Site+For+Residue+A+504'>AC4</scene>, <scene name='pdbsite=AC5:Mn+Binding+Site+For+Residue+B+505'>AC5</scene>, <scene name='pdbsite=AC6:Mn+Binding+Site+For+Residue+B+506'>AC6</scene>, <scene name='pdbsite=AC7:Mn+Binding+Site+For+Residue+B+507'>AC7</scene>, <scene name='pdbsite=AC8:Mn+Binding+Site+For+Residue+A+508'>AC8</scene>, <scene name='pdbsite=AC9:Mn+Binding+Site+For+Residue+B+509'>AC9</scene>, <scene name='pdbsite=BC1:Amp+Binding+Site+For+Residue+A+601'>BC1</scene> and <scene name='pdbsite=BC2:Amp+Binding+Site+For+Residue+B+602'>BC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QJT OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism., Huang N, Sorci L, Zhang X, Brautigam CA, Li X, Raffaelli N, Magni G, Grishin NV, Osterman AL, Zhang H, Structure. 2008 Feb;16(2):196-209. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18275811 18275811]
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</div>
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<div class="pdbe-citations 2qjt" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Francisella tularensis]]
[[Category: Francisella tularensis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Brautigan, C.]]
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[[Category: Brautigan C]]
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[[Category: Grishin, N V.]]
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[[Category: Grishin NV]]
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[[Category: Huang, N.]]
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[[Category: Huang N]]
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[[Category: Magni, G.]]
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[[Category: Magni G]]
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[[Category: Osterman, A.]]
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[[Category: Osterman A]]
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[[Category: Raffaelli, N.]]
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[[Category: Raffaelli N]]
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[[Category: Sorci, L.]]
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[[Category: Sorci L]]
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[[Category: Zhang, H.]]
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[[Category: Zhang H]]
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[[Category: Zhang, X.]]
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[[Category: Zhang X]]
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[[Category: AMP]]
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[[Category: MN]]
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[[Category: hydrolase]]
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[[Category: transferase]]
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[[Category: two individual domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 5 13:22:13 2008''
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Current revision

Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase complexed with AMP and MN ion from Francisella tularensis

PDB ID 2qjt

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