2r5w

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(New page: 200px<br /><applet load="2r5w" size="350" color="white" frame="true" align="right" spinBox="true" caption="2r5w, resolution 2.30&Aring;" /> '''Crystal structure of...)
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[[Image:2r5w.jpg|left|200px]]<br /><applet load="2r5w" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2r5w, resolution 2.30&Aring;" />
 
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'''Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis'''<br />
 
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==Overview==
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==Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis==
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Bacterial NadM-Nudix is a bifunctional enzyme containing a nicotinamide mononucleotide (NMN) adenylyltransferase and an ADP-ribose (ADPR) pyrophosphatase domain. While most members of this enzyme family, such as that from a model cyanobacterium Synechocystis sp., are involved primarily in nicotinamide adenine dinucleotide (NAD) salvage/recycling pathways, its close homolog in a category-A biodefense pathogen, Francisella tularensis, likely plays a central role in a recently discovered novel pathway of NAD de novo synthesis. The crystal structures of NadM-Nudix from both species, including their complexes with various ligands and catalytic metal ions, revealed detailed configurations of the substrate binding and catalytic sites in both domains. The structure of the N-terminal NadM domain may be exploited for designing new antitularemia therapeutics. The ADPR binding site in the C-terminal Nudix domain is substantially different from that of Escherichia coli ADPR pyrophosphatase, and is more similar to human NUDT9. The latter observation provided new insights into the ligand binding mode of ADPR-gated Ca(2+) channel TRPM2.
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<StructureSection load='2r5w' size='340' side='right'caption='[[2r5w]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2r5w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Francisella_tularensis_subsp._tularensis Francisella tularensis subsp. tularensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R5W FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5w OCA], [https://pdbe.org/2r5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r5w RCSB], [https://www.ebi.ac.uk/pdbsum/2r5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r5w ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/2r5w_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r5w ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bacterial NadM-Nudix is a bifunctional enzyme containing a nicotinamide mononucleotide (NMN) adenylyltransferase and an ADP-ribose (ADPR) pyrophosphatase domain. While most members of this enzyme family, such as that from a model cyanobacterium Synechocystis sp., are involved primarily in nicotinamide adenine dinucleotide (NAD) salvage/recycling pathways, its close homolog in a category-A biodefense pathogen, Francisella tularensis, likely plays a central role in a recently discovered novel pathway of NAD de novo synthesis. The crystal structures of NadM-Nudix from both species, including their complexes with various ligands and catalytic metal ions, revealed detailed configurations of the substrate binding and catalytic sites in both domains. The structure of the N-terminal NadM domain may be exploited for designing new antitularemia therapeutics. The ADPR binding site in the C-terminal Nudix domain is substantially different from that of Escherichia coli ADPR pyrophosphatase, and is more similar to human NUDT9. The latter observation provided new insights into the ligand binding mode of ADPR-gated Ca2+ channel TRPM2.
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==About this Structure==
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Bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase: structure and function in bacterial NAD metabolism.,Huang N, Sorci L, Zhang X, Brautigam CA, Li X, Raffaelli N, Magni G, Grishin NV, Osterman AL, Zhang H Structure. 2008 Feb;16(2):196-209. PMID:18275811<ref>PMID:18275811</ref>
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2R5W is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Francisella_tularensis_subsp._tularensis Francisella tularensis subsp. tularensis] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+B+348'>AC1</scene>, <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+B+349'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Residue+B+350'>AC3</scene>, <scene name='pdbsite=AC4:Cl+Binding+Site+For+Residue+B+351'>AC4</scene>, <scene name='pdbsite=AC5:Cl+Binding+Site+For+Residue+B+352'>AC5</scene>, <scene name='pdbsite=AC6:Mg+Binding+Site+For+Residue+A+348'>AC6</scene>, <scene name='pdbsite=AC7:Mg+Binding+Site+For+Residue+A+349'>AC7</scene>, <scene name='pdbsite=AC8:Mg+Binding+Site+For+Residue+A+350'>AC8</scene> and <scene name='pdbsite=AC9:Cl+Binding+Site+For+Residue+A+351'>AC9</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5W OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Bifunctional NMN Adenylyltransferase/ADP-Ribose Pyrophosphatase: Structure and Function in Bacterial NAD Metabolism., Huang N, Sorci L, Zhang X, Brautigam CA, Li X, Raffaelli N, Magni G, Grishin NV, Osterman AL, Zhang H, Structure. 2008 Feb;16(2):196-209. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18275811 18275811]
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</div>
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<div class="pdbe-citations 2r5w" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Francisella tularensis subsp. tularensis]]
[[Category: Francisella tularensis subsp. tularensis]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Brautigan, C.]]
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[[Category: Brautigan C]]
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[[Category: Grishin, N.]]
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[[Category: Grishin N]]
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[[Category: Huang, N.]]
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[[Category: Huang N]]
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[[Category: Li, X.]]
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[[Category: Li X]]
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[[Category: Osterman, A.]]
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[[Category: Osterman A]]
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[[Category: Raffaelli, N.]]
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[[Category: Raffaelli N]]
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[[Category: Sorci, L.]]
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[[Category: Sorci L]]
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[[Category: Zhang, H.]]
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[[Category: Zhang H]]
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[[Category: Zhang, X.]]
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[[Category: Zhang X]]
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[[Category: CL]]
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[[Category: MG]]
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[[Category: hydrolase]]
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[[Category: nucleotidyltransferase]]
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[[Category: transferase]]
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[[Category: two domain protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 5 13:22:30 2008''
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Current revision

Crystal structure of a bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase from Francisella tularensis

PDB ID 2r5w

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