3cb3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3cb3" size="350" color="white" frame="true" align="right" spinBox="true" caption="3cb3, resolution 2.00&Aring;" /> '''Crystal structure of...)
Current revision (09:34, 21 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cb3.jpg|left|200px]]<br /><applet load="3cb3" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="3cb3, resolution 2.00&Aring;" />
 
-
'''Crystal structure of L-Talarate dehydratase from Polaromonas sp. JS666 complexed with Mg and L-glucarate'''<br />
 
-
==About this Structure==
+
==Crystal structure of L-Talarate dehydratase from Polaromonas sp. JS666 complexed with Mg and L-glucarate==
-
3CB3 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Polaromonas_sp._js666 Polaromonas sp. js666] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=LGT:'>LGT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+501'>AC1</scene>, <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+B+502'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Residue+C+501'>AC3</scene>, <scene name='pdbsite=AC4:Mg+Binding+Site+For+Residue+D+502'>AC4</scene>, <scene name='pdbsite=AC5:Mg+Binding+Site+For+Residue+A+502'>AC5</scene>, <scene name='pdbsite=AC6:Mg+Binding+Site+For+Residue+B+503'>AC6</scene>, <scene name='pdbsite=AC7:Mg+Binding+Site+For+Residue+C+502'>AC7</scene>, <scene name='pdbsite=AC8:Mg+Binding+Site+For+Residue+D+503'>AC8</scene>, <scene name='pdbsite=AC9:Lgt+Binding+Site+For+Residue+A+601'>AC9</scene>, <scene name='pdbsite=BC1:Lgt+Binding+Site+For+Residue+B+601'>BC1</scene>, <scene name='pdbsite=BC2:Lgt+Binding+Site+For+Residue+C+601'>BC2</scene> and <scene name='pdbsite=BC3:Lgt+Binding+Site+For+Residue+D+601'>BC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CB3 OCA].
+
<StructureSection load='3cb3' size='340' side='right'caption='[[3cb3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
[[Category: Polaromonas sp. js666]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[3cb3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Polaromonas_sp._JS666 Polaromonas sp. JS666]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CB3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CB3 FirstGlance]. <br>
-
[[Category: Almo, S C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LGT:L-GLUCARIC+ACID'>LGT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[Category: Fedorov, A A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cb3 OCA], [https://pdbe.org/3cb3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cb3 RCSB], [https://www.ebi.ac.uk/pdbsum/3cb3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cb3 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cb3 TOPSAN]</span></td></tr>
-
[[Category: Fedorov, E V.]]
+
</table>
-
[[Category: Gerlt, J A.]]
+
== Function ==
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[https://www.uniprot.org/uniprot/Q12GE3_POLSJ Q12GE3_POLSJ]
-
[[Category: Yew, W S.]]
+
== Evolutionary Conservation ==
-
[[Category: LGT]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: MG]]
+
Check<jmol>
-
[[Category: isomerase]]
+
<jmolCheckbox>
-
[[Category: l-glucarate]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cb/3cb3_consurf.spt"</scriptWhenChecked>
-
[[Category: l-talarate dehydratase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: new york structural genomix research consortium]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: nysgxrc]]
+
</jmolCheckbox>
-
[[Category: protein structure initiative]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cb3 ConSurf].
-
[[Category: psi-2]]
+
<div style="clear:both"></div>
-
[[Category: structural genomic]]
+
-
[[Category: target 9382a]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 5 13:25:01 2008''
+
==See Also==
 +
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Polaromonas sp. JS666]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Fedorov AA]]
 +
[[Category: Fedorov EV]]
 +
[[Category: Gerlt JA]]
 +
[[Category: Yew WS]]

Current revision

Crystal structure of L-Talarate dehydratase from Polaromonas sp. JS666 complexed with Mg and L-glucarate

PDB ID 3cb3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cb3"
Personal tools