2b2d

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{{STRUCTURE_2b2d| PDB=2b2d | SCENE= }}
 
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===RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid===
 
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{{ABSTRACT_PUBMED_16531233}}
 
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==Function==
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==RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid==
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[[http://www.uniprot.org/uniprot/COAT_BPMS2 COAT_BPMS2]] Forms the phage shell; binds to the phage RNA.
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<StructureSection load='2b2d' size='340' side='right'caption='[[2b2d]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2b2d]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_MS2 Escherichia phage MS2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B2D FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b2d OCA], [https://pdbe.org/2b2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b2d RCSB], [https://www.ebi.ac.uk/pdbsum/2b2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b2d ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_BPMS2 CAPSD_BPMS2] Self-assembles to form the T=3 icosahedral virus shell that protects the viral nucleic acid. Acts as a translational repressor by binding with high specificity to a single stem-loop structure in the genomic RNA that contains the initiation codon of the gene for the viral replicase. Involved in virus assembly through the interaction between a capsid protein dimer and the multiple packaging signals present in the RNA genome.<ref>PMID:16531233</ref> <ref>PMID:18662904</ref> <ref>PMID:26608810</ref> <ref>PMID:8254664</ref> <ref>PMID:9245600</ref> <ref>PMID:9469847</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b2/2b2d_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2b2d ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Sequence-specific interactions between RNA stem-loops and coat protein (CP) subunits play vital roles in the life cycles of the RNA bacteriophages, e.g., by allowing translational repression of their replicase cistrons and tagging their own RNA genomes for encapsidation. The CPs of bacteriophages Qbeta and MS2 each discriminate in favor of their cognate translational operators, even in the presence of closely related operators from other phages in vivo. Discrete mutations within the MS2 CP have been shown to relax this discrimination in vitro. We have determined the structures of eight complexes between such mutants and both MS2 and Qbeta stem-loops with X-ray crystallography. In conjunction with previously determined in vivo repression data, the structures enable us to propose the molecular basis for the discrimination mechanism.
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==About this Structure==
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Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2.,Horn WT, Tars K, Grahn E, Helgstrand C, Baron AJ, Lago H, Adams CJ, Peabody DS, Phillips SE, Stonehouse NJ, Liljas L, Stockley PG Structure. 2006 Mar;14(3):487-95. PMID:16531233<ref>PMID:16531233</ref>
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[[2b2d]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacterio_phage_ms2 Enterobacterio phage ms2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B2D OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:016531233</ref><references group="xtra"/><references/>
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</div>
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[[Category: Enterobacterio phage ms2]]
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<div class="pdbe-citations 2b2d" style="background-color:#fffaf0;"></div>
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[[Category: Adams, C J.]]
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== References ==
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[[Category: Baron, A J.]]
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<references/>
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[[Category: Grahn, E.]]
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__TOC__
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[[Category: Helgstrand, C.]]
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</StructureSection>
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[[Category: Horn, W T.]]
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[[Category: Escherichia phage MS2]]
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[[Category: Lago, H.]]
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[[Category: Large Structures]]
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[[Category: Liljas, L.]]
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[[Category: Adams CJ]]
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[[Category: Peabody, D S.]]
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[[Category: Baron AJ]]
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[[Category: Phillips, S E.V.]]
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[[Category: Grahn E]]
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[[Category: Stockley, P G.]]
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[[Category: Helgstrand C]]
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[[Category: Stonehouse, N J.]]
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[[Category: Horn WT]]
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[[Category: Tars, K.]]
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[[Category: Lago H]]
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[[Category: Capsid]]
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[[Category: Liljas L]]
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[[Category: Levivirus]]
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[[Category: Peabody DS]]
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[[Category: Protein/rna]]
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[[Category: Phillips SEV]]
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[[Category: Virus-viral protein-rna complex]]
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[[Category: Stockley PG]]
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[[Category: Virus/viral]]
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[[Category: Stonehouse NJ]]
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[[Category: Tars K]]

Current revision

RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid

PDB ID 2b2d

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