2l8d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:39, 15 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure/function of the LBR Tudor domain==
==Structure/function of the LBR Tudor domain==
-
<StructureSection load='2l8d' size='340' side='right' caption='[[2l8d]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+
<StructureSection load='2l8d' size='340' side='right'caption='[[2l8d]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
[[2l8d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L8D OCA]. <br>
+
<table><tr><td colspan='2'>[[2l8d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L8D FirstGlance]. <br>
-
<b>Activity:</b> <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l8d OCA], [https://pdbe.org/2l8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l8d RCSB], [https://www.ebi.ac.uk/pdbsum/2l8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l8d ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LBR_CHICK LBR_CHICK] Anchors the lamina and the heterochromatin to the inner nuclear membrane. Can interact with chromodomain proteins.
 +
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Lamin B receptor (LBR) is a polytopic protein of the nuclear envelope thought to connect the inner nuclear membrane with the underlying nuclear lamina and peripheral heterochromatin. To better understand the function of this protein, we have examined in detail its nucleoplasmic region, which is predicted to harbor a Tudor domain (LBR-TD). Structural analysis by multidimensional NMR spectroscopy establishes that LBR-TD indeed adopts a classical beta-barrel Tudor fold in solution, which, however, features an incomplete aromatic cage. Removal of LBR-TD renders LBR more mobile at the plane of the nuclear envelope, but the isolated module does not bind to nuclear lamins, heterochromatin proteins (MeCP2), and nucleosomes, nor does it associate with methylated Arg/Lys residues through its aromatic cage. Instead, LBR-TD exhibits tight and stoichiometric binding to the "histone-fold" region of unassembled, free histone H3, suggesting an interesting role in histone assembly. Consistent with such a role, robust binding to native nucleosomes is observed when LBR-TD is extended toward its carboxyl terminus, to include an area rich in Ser-Arg residues. The Ser-Arg region, alone or in combination with LBR-TD, binds both unassembled and assembled H3/H4 histones, suggesting that the TD/RS interface may operate as a "histone chaperone-like platform."
Lamin B receptor (LBR) is a polytopic protein of the nuclear envelope thought to connect the inner nuclear membrane with the underlying nuclear lamina and peripheral heterochromatin. To better understand the function of this protein, we have examined in detail its nucleoplasmic region, which is predicted to harbor a Tudor domain (LBR-TD). Structural analysis by multidimensional NMR spectroscopy establishes that LBR-TD indeed adopts a classical beta-barrel Tudor fold in solution, which, however, features an incomplete aromatic cage. Removal of LBR-TD renders LBR more mobile at the plane of the nuclear envelope, but the isolated module does not bind to nuclear lamins, heterochromatin proteins (MeCP2), and nucleosomes, nor does it associate with methylated Arg/Lys residues through its aromatic cage. Instead, LBR-TD exhibits tight and stoichiometric binding to the "histone-fold" region of unassembled, free histone H3, suggesting an interesting role in histone assembly. Consistent with such a role, robust binding to native nucleosomes is observed when LBR-TD is extended toward its carboxyl terminus, to include an area rich in Ser-Arg residues. The Ser-Arg region, alone or in combination with LBR-TD, binds both unassembled and assembled H3/H4 histones, suggesting that the TD/RS interface may operate as a "histone chaperone-like platform."
Line 9: Line 15:
Solution structure and molecular interactions of lamin B receptor tudor domain.,Liokatis S, Edlich C, Soupsana K, Giannios I, Panagiotidou P, Tripsianes K, Sattler M, Georgatos SD, Politou AS J Biol Chem. 2012 Jan 6;287(2):1032-42. Epub 2011 Nov 3. PMID:22052904<ref>PMID:22052904</ref>
Solution structure and molecular interactions of lamin B receptor tudor domain.,Liokatis S, Edlich C, Soupsana K, Giannios I, Panagiotidou P, Tripsianes K, Sattler M, Georgatos SD, Politou AS J Biol Chem. 2012 Jan 6;287(2):1032-42. Epub 2011 Nov 3. PMID:22052904<ref>PMID:22052904</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2l8d" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 15: Line 23:
</StructureSection>
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Edlich, C.]]
+
[[Category: Large Structures]]
-
[[Category: Georgatos, S D.]]
+
[[Category: Edlich C]]
-
[[Category: Giannios, I.]]
+
[[Category: Georgatos SD]]
-
[[Category: Liokatis, S.]]
+
[[Category: Giannios I]]
-
[[Category: Politou, A S.]]
+
[[Category: Liokatis S]]
-
[[Category: Sattler, M.]]
+
[[Category: Politou AS]]
-
[[Category: Soupsana, K.]]
+
[[Category: Sattler M]]
-
[[Category: Dna binding protein]]
+
[[Category: Soupsana K]]

Current revision

Structure/function of the LBR Tudor domain

PDB ID 2l8d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools