4ptb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:58, 20 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of human SP100 PHD-Bromodomain in the free state==
==Crystal structure of human SP100 PHD-Bromodomain in the free state==
-
<StructureSection load='4ptb' size='340' side='right' caption='[[4ptb]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='4ptb' size='340' side='right'caption='[[4ptb]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ptb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PTB OCA]. <br>
+
<table><tr><td colspan='2'>[[4ptb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PTB FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ptb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ptb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ptb RCSB], [http://www.ebi.ac.uk/pdbsum/4ptb PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ptb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ptb OCA], [https://pdbe.org/4ptb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ptb RCSB], [https://www.ebi.ac.uk/pdbsum/4ptb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ptb ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SP100_HUMAN SP100_HUMAN] Together with PML, this tumor suppressor is a major constituent of the PML bodies, a subnuclear organelle involved in a large number of physiological processes including cell growth, differentiation and apoptosis. Functions as a transcriptional coactivator of ETS1 and ETS2 according to PubMed:11909962. Under certain conditions, it may also act as a corepressor of ETS1 preventing its binding to DNA according to PubMed:15247905. Through the regulation of ETS1 it may play a role in angiogenesis, controlling endothelial cell motility and invasion. Through interaction with the MRN complex it may be involved in the regulation of telomeres lengthening. May also regulate TP53-mediated transcription and through CASP8AP2, regulate FAS-mediated apoptosis. Also plays a role in infection by viruses, including human cytomegalovirus and Epstein-Barr virus, through mechanisms that may involve chromatin and/or transcriptional regulation.<ref>PMID:11909962</ref> <ref>PMID:14647468</ref> <ref>PMID:15247905</ref> <ref>PMID:15592518</ref> <ref>PMID:15767676</ref> <ref>PMID:16177824</ref> <ref>PMID:17245429</ref> <ref>PMID:21274506</ref> <ref>PMID:21880768</ref>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Homo sapiens]]
-
[[Category: Bountra, C.]]
+
[[Category: Large Structures]]
-
[[Category: Burgess-Brown, N.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Delft, F von.]]
+
[[Category: Bountra C]]
-
[[Category: Edwards, A M.]]
+
[[Category: Burgess-Brown N]]
-
[[Category: Filippakopoulos, P.]]
+
[[Category: Edwards AM]]
-
[[Category: Knapp, S.]]
+
[[Category: Filippakopoulos P]]
-
[[Category: Krojer, T.]]
+
[[Category: Knapp S]]
-
[[Category: Newman, J.]]
+
[[Category: Krojer T]]
-
[[Category: Nunez-Alonso, G.]]
+
[[Category: Newman J]]
-
[[Category: Savitsky, P.]]
+
[[Category: Nunez-Alonso G]]
-
[[Category: Szykowska, A.]]
+
[[Category: Savitsky P]]
-
[[Category: Tallant, C.]]
+
[[Category: Szykowska A]]
-
[[Category: Nuclear autoantigen sp-100]]
+
[[Category: Tallant C]]
-
[[Category: Nuclear dot-associated sp100 protein]]
+
[[Category: Von Delft F]]
-
[[Category: Speckled 100 kda]]
+
-
[[Category: Transcription]]
+

Current revision

Crystal structure of human SP100 PHD-Bromodomain in the free state

PDB ID 4ptb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4ptb"
Personal tools