4p1w

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==Crystal structure of Atg13(17BR)-Atg17-Atg29-Atg31 complex==
==Crystal structure of Atg13(17BR)-Atg17-Atg29-Atg31 complex==
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<StructureSection load='4p1w' size='340' side='right' caption='[[4p1w]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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<StructureSection load='4p1w' size='340' side='right'caption='[[4p1w]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4p1w]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P1W OCA]. <br>
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<table><tr><td colspan='2'>[[4p1w]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachancea_thermotolerans_CBS_6340 Lachancea thermotolerans CBS 6340]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P1W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P1W FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4p1n|4p1n]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p1w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p1w OCA], [https://pdbe.org/4p1w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p1w RCSB], [https://www.ebi.ac.uk/pdbsum/4p1w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p1w ProSAT]</span></td></tr>
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<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
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</table>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p1w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p1w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4p1w RCSB], [http://www.ebi.ac.uk/pdbsum/4p1w PDBsum]</span></td></tr>
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== Function ==
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<table>
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[https://www.uniprot.org/uniprot/C5DF24_LACTC C5DF24_LACTC]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Assembly of the preautophagosomal structure (PAS) is essential for autophagy initiation in yeast. Starvation-induced dephosphorylation of Atg13 is required for the formation of the Atg1-Atg13-Atg17-Atg29-Atg31 complex (Atg1 complex), a prerequisite for PAS assembly. However, molecular details underlying these events have not been established. Here we studied the interactions of yeast Atg13 with Atg1 and Atg17 by X-ray crystallography. Atg13 binds tandem microtubule interacting and transport domains in Atg1, using an elongated helix-loop-helix region. Atg13 also binds Atg17, using a short region, thereby bridging Atg1 and Atg17 and leading to Atg1-complex formation. Dephosphorylation of specific serines in Atg13 enhanced its interaction with not only Atg1 but also Atg17. These observations update the autophagy-initiation model as follows: upon starvation, dephosphorylated Atg13 binds both Atg1 and Atg17, and this promotes PAS assembly and autophagy progression.
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Structural basis of starvation-induced assembly of the autophagy initiation complex.,Fujioka Y, Suzuki SW, Yamamoto H, Kondo-Kakuta C, Kimura Y, Hirano H, Akada R, Inagaki F, Ohsumi Y, Noda NN Nat Struct Mol Biol. 2014 May 4. doi: 10.1038/nsmb.2822. PMID:24793651<ref>PMID:24793651</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4p1w" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Autophagy-related protein 3D structures|Autophagy-related protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Fujioka, Y.]]
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[[Category: Lachancea thermotolerans CBS 6340]]
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[[Category: Noda, N N.]]
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[[Category: Large Structures]]
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[[Category: Complex]]
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[[Category: Fujioka Y]]
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[[Category: Noda NN]]

Current revision

Crystal structure of Atg13(17BR)-Atg17-Atg29-Atg31 complex

PDB ID 4p1w

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