This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4q60

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:28, 20 September 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a 4-hydroxyproline epimerase from Burkholderia Multivorans atcc 17616, target EFI-506586, open form, with bound pyrrole-2-carboxylate==
==Crystal structure of a 4-hydroxyproline epimerase from Burkholderia Multivorans atcc 17616, target EFI-506586, open form, with bound pyrrole-2-carboxylate==
-
<StructureSection load='4q60' size='340' side='right' caption='[[4q60]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='4q60' size='340' side='right'caption='[[4q60]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4q60]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q60 OCA]. <br>
+
<table><tr><td colspan='2'>[[4q60]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_multivorans_ATCC_17616 Burkholderia multivorans ATCC 17616]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q60 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q60 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PYC:PYRROLE-2-CARBOXYLATE'>PYC</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PYC:PYRROLE-2-CARBOXYLATE'>PYC</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q60 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q60 RCSB], [http://www.ebi.ac.uk/pdbsum/4q60 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q60 OCA], [https://pdbe.org/4q60 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q60 RCSB], [https://www.ebi.ac.uk/pdbsum/4q60 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q60 ProSAT]</span></td></tr>
-
<table>
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/4HPE1_BURM1 4HPE1_BURM1] Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Displays no proline racemase activity.<ref>PMID:24980702</ref>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Proline racemase]]
+
[[Category: Burkholderia multivorans ATCC 17616]]
-
[[Category: Almo, S C.]]
+
[[Category: Large Structures]]
-
[[Category: Bhosle, R.]]
+
[[Category: Al Obaidi N]]
-
[[Category: Chowdhury, S.]]
+
[[Category: Almo SC]]
-
[[Category: Efi, Enzyme Function Initiative.]]
+
[[Category: Bhosle R]]
-
[[Category: Evans, B.]]
+
[[Category: Chowdhury S]]
-
[[Category: Gerlt, J A.]]
+
[[Category: Evans B]]
-
[[Category: Glenn, A S.]]
+
[[Category: Gerlt JA]]
-
[[Category: Hammonds, J.]]
+
[[Category: Glenn AS]]
-
[[Category: Hillerich, B.]]
+
[[Category: Hammonds J]]
-
[[Category: Love, J.]]
+
[[Category: Hillerich B]]
-
[[Category: Obaidi, N Al.]]
+
[[Category: Love J]]
-
[[Category: Patskovsky, Y.]]
+
[[Category: Patskovsky Y]]
-
[[Category: Seidel, R D.]]
+
[[Category: Seidel RD]]
-
[[Category: Sojitra, S.]]
+
[[Category: Sojitra S]]
-
[[Category: Stead, M.]]
+
[[Category: Stead M]]
-
[[Category: Toro, R.]]
+
[[Category: Toro R]]
-
[[Category: Washington, E.]]
+
[[Category: Washington E]]
-
[[Category: Efi]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Probable proline racemase]]
+
-
[[Category: Proline racemase family]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of a 4-hydroxyproline epimerase from Burkholderia Multivorans atcc 17616, target EFI-506586, open form, with bound pyrrole-2-carboxylate

PDB ID 4q60

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools