This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2w9x
From Proteopedia
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | == | + | |
| - | <StructureSection load='2w9x' size='340' side='right' caption='[[2w9x]], [[Resolution|resolution]] 2.00Å' scene=''> | + | ==The active site of a carbohydrate esterase displays divergent catalytic and non-catalytic binding functions== |
| + | <StructureSection load='2w9x' size='340' side='right'caption='[[2w9x]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2w9x]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2w9x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"cellvibrio_cellulosa"_nagy_et_al._2002 "cellvibrio cellulosa" nagy et al. 2002]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W9X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W9X FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2wab|2wab]], [[2wao|2wao]], [[2waa|2waa]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wab|2wab]], [[2wao|2wao]], [[2waa|2waa]]</div></td></tr> |
| - | <tr | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w9x OCA], [https://pdbe.org/2w9x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w9x RCSB], [https://www.ebi.ac.uk/pdbsum/2w9x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w9x ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | <table> | + | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w9/2w9x_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w9/2w9x_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w9x ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 24: | Line 24: | ||
The active site of a carbohydrate esterase displays divergent catalytic and noncatalytic binding functions.,Montanier C, Money VA, Pires VM, Flint JE, Pinheiro BA, Goyal A, Prates JA, Izumi A, Stalbrand H, Morland C, Cartmell A, Kolenova K, Topakas E, Dodson EJ, Bolam DN, Davies GJ, Fontes CM, Gilbert HJ PLoS Biol. 2009 Mar 31;7(3):e71. PMID:19338387<ref>PMID:19338387</ref> | The active site of a carbohydrate esterase displays divergent catalytic and noncatalytic binding functions.,Montanier C, Money VA, Pires VM, Flint JE, Pinheiro BA, Goyal A, Prates JA, Izumi A, Stalbrand H, Morland C, Cartmell A, Kolenova K, Topakas E, Dodson EJ, Bolam DN, Davies GJ, Fontes CM, Gilbert HJ PLoS Biol. 2009 Mar 31;7(3):e71. PMID:19338387<ref>PMID:19338387</ref> | ||
| - | From | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
</div> | </div> | ||
| + | <div class="pdbe-citations 2w9x" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Cellvibrio | + | [[Category: Cellvibrio cellulosa nagy et al. 2002]] |
| - | [[Category: Benedita, P A | + | [[Category: Large Structures]] |
| - | [[Category: Bolam, D N | + | [[Category: Benedita, P A]] |
| - | [[Category: Cartmell, A | + | [[Category: Bolam, D N]] |
| - | [[Category: Davies, G J | + | [[Category: Cartmell, A]] |
| - | [[Category: Dobson, E | + | [[Category: Davies, G J]] |
| - | [[Category: Flint, J E | + | [[Category: Dobson, E]] |
| - | [[Category: Fontes, C M | + | [[Category: Flint, J E]] |
| - | [[Category: Gilbert, H J | + | [[Category: Fontes, C M]] |
| - | [[Category: Goyal, A | + | [[Category: Gilbert, H J]] |
| - | [[Category: Izumi, A | + | [[Category: Goyal, A]] |
| - | [[Category: Kolenova, K | + | [[Category: Izumi, A]] |
| - | [[Category: Money, V A | + | [[Category: Kolenova, K]] |
| - | [[Category: Montanier, C | + | [[Category: Money, V A]] |
| - | [[Category: Morland, C | + | [[Category: Montanier, C]] |
| - | [[Category: Pires, V | + | [[Category: Morland, C]] |
| - | [[Category: Prates, J A | + | [[Category: Pires, V]] |
| - | [[Category: Stalbrand, H | + | [[Category: Prates, J A]] |
| - | [[Category: Topakas, E | + | [[Category: Stalbrand, H]] |
| + | [[Category: Topakas, E]] | ||
[[Category: Acetyl xylan esterase]] | [[Category: Acetyl xylan esterase]] | ||
[[Category: Carbohydrate esterase family 2]] | [[Category: Carbohydrate esterase family 2]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
Current revision
The active site of a carbohydrate esterase displays divergent catalytic and non-catalytic binding functions
| |||||||||||
Categories: Cellvibrio cellulosa nagy et al. 2002 | Large Structures | Benedita, P A | Bolam, D N | Cartmell, A | Davies, G J | Dobson, E | Flint, J E | Fontes, C M | Gilbert, H J | Goyal, A | Izumi, A | Kolenova, K | Money, V A | Montanier, C | Morland, C | Pires, V | Prates, J A | Stalbrand, H | Topakas, E | Acetyl xylan esterase | Carbohydrate esterase family 2 | Hydrolase

