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2vkg
From Proteopedia
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==COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS== | ==COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS== | ||
| - | <StructureSection load='2vkg' size='340' side='right' caption='[[2vkg]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='2vkg' size='340' side='right'caption='[[2vkg]], [[Resolution|resolution]] 1.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2vkg]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2vkg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum_R1 Halobacterium salinarum R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VKG FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CF4:[4-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN-10(2H)-YL)BUTYL]CARBAMIC+ACID'>CF4</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CF4:[4-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDROBENZO[G]PTERIDIN-10(2H)-YL)BUTYL]CARBAMIC+ACID'>CF4</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | <tr | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vkg OCA], [https://pdbe.org/2vkg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vkg RCSB], [https://www.ebi.ac.uk/pdbsum/2vkg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vkg ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | <table> | + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q9HPW4_HALSA Q9HPW4_HALSA] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/2vkg_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/2vkg_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vkg ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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Electrochemical switching of the flavoprotein dodecin at gold surfaces modified by flavin-DNA hybrid linkers.,Grininger M, Noll G, Trawoger S, Sinner EK, Oesterhelt D Biointerphases. 2008 Sep;3(3):51-8. PMID:20408700<ref>PMID:20408700</ref> | Electrochemical switching of the flavoprotein dodecin at gold surfaces modified by flavin-DNA hybrid linkers.,Grininger M, Noll G, Trawoger S, Sinner EK, Oesterhelt D Biointerphases. 2008 Sep;3(3):51-8. PMID:20408700<ref>PMID:20408700</ref> | ||
| - | From | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
</div> | </div> | ||
| + | <div class="pdbe-citations 2vkg" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Halobacterium salinarum]] | + | [[Category: Halobacterium salinarum R1]] |
| - | [[Category: Grininger | + | [[Category: Large Structures]] |
| - | [[Category: Noell | + | [[Category: Grininger M]] |
| - | [[Category: Oesterhelt | + | [[Category: Noell G]] |
| - | [[Category: Sinner | + | [[Category: Oesterhelt D]] |
| - | [[Category: Trawoeger | + | [[Category: Sinner E]] |
| - | + | [[Category: Trawoeger S]] | |
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Current revision
COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
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