2vyc

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==CRYSTAL STRUCTURE OF ACID INDUCED ARGININE DECARBOXYLASE FROM E. COLI==
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<StructureSection load='2vyc' size='340' side='right' caption='[[2vyc]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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==Crystal Structure of Acid Induced Arginine Decarboxylase from E. coli==
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<StructureSection load='2vyc' size='340' side='right'caption='[[2vyc]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2vyc]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VYC OCA]. <br>
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<table><tr><td colspan='2'>[[2vyc]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VYC FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)'>LLP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vyc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vyc RCSB], [http://www.ebi.ac.uk/pdbsum/2vyc PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vyc OCA], [https://pdbe.org/2vyc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vyc RCSB], [https://www.ebi.ac.uk/pdbsum/2vyc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vyc ProSAT]</span></td></tr>
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<table>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ADIA_ECOLI ADIA_ECOLI] ADC can be found in two forms: biodegradative and biosynthetic. The biodegradative form may play a role in regulating pH by consuming proteins.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vyc_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vyc_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vyc ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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Crystal Structure of the Acid Induced Arginine Decarboxylase from Escherichia coli: Reversible Decamer Assembly Controls Enzyme Activity.,Andrell J, Hicks M, Palmer T, Carpenter E, Iwata S, Maher M Biochemistry. 2009 Mar 19. PMID:19298070<ref>PMID:19298070</ref>
Crystal Structure of the Acid Induced Arginine Decarboxylase from Escherichia coli: Reversible Decamer Assembly Controls Enzyme Activity.,Andrell J, Hicks M, Palmer T, Carpenter E, Iwata S, Maher M Biochemistry. 2009 Mar 19. PMID:19298070<ref>PMID:19298070</ref>
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 2vyc" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Arginine decarboxylase]]
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[[Category: Large Structures]]
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[[Category: Escherichia coli]]
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[[Category: Andrell J]]
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[[Category: Andrell, J.]]
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[[Category: Carpenter EP]]
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[[Category: Carpenter, E P.]]
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[[Category: Hicks MG]]
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[[Category: Hicks, M G.]]
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[[Category: Iwata S]]
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[[Category: Iwata, S.]]
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[[Category: Maher MJ]]
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[[Category: Maher, M J.]]
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[[Category: Palmer T]]
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[[Category: Palmer, T.]]
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[[Category: Acid resistance]]
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[[Category: Arginine decarboxylase]]
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[[Category: Decarboxylase]]
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[[Category: Lyase]]
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[[Category: Plp-dependent enzyme]]
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[[Category: Pyridoxal phosphate]]
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Current revision

Crystal Structure of Acid Induced Arginine Decarboxylase from E. coli

PDB ID 2vyc

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