This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2xyt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:41, 20 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of Aplysia californica AChBP in complex with d- tubocurarine==
==Crystal structure of Aplysia californica AChBP in complex with d- tubocurarine==
-
<StructureSection load='2xyt' size='340' side='right' caption='[[2xyt]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+
<StructureSection load='2xyt' size='340' side='right'caption='[[2xyt]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2xyt]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XYT OCA]. <br>
+
<table><tr><td colspan='2'>[[2xyt]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XYT FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TC9:D-TUBOCURARINE'>TC9</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2wn9|2wn9]], [[2w8f|2w8f]], [[2byp|2byp]], [[2c9t|2c9t]], [[2byq|2byq]], [[2w8g|2w8g]], [[2x00|2x00]], [[2uz6|2uz6]], [[2wnl|2wnl]], [[2br7|2br7]], [[2br8|2br8]], [[2xnv|2xnv]], [[2byr|2byr]], [[2byn|2byn]], [[2bys|2bys]], [[2xnt|2xnt]], [[2wnj|2wnj]], [[2wzy|2wzy]], [[2wnc|2wnc]], [[2xnu|2xnu]], [[2xys|2xys]], [[2y7y|2y7y]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TC9:D-TUBOCURARINE'>TC9</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xyt OCA], [https://pdbe.org/2xyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xyt RCSB], [https://www.ebi.ac.uk/pdbsum/2xyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xyt ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xyt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xyt RCSB], [http://www.ebi.ac.uk/pdbsum/2xyt PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8WSF8_APLCA Q8WSF8_APLCA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 14: Line 16:
A Structural and Mutagenic Blueprint for Molecular Recognition of Strychnine and d-Tubocurarine by Different Cys-Loop Receptors.,Brams M, Pandya A, Kuzmin D, van Elk R, Krijnen L, Yakel JL, Tsetlin V, Smit AB, Ulens C PLoS Biol. 2011 Mar;9(3):e1001034. Epub 2011 Mar 29. PMID:21468359<ref>PMID:21468359</ref>
A Structural and Mutagenic Blueprint for Molecular Recognition of Strychnine and d-Tubocurarine by Different Cys-Loop Receptors.,Brams M, Pandya A, Kuzmin D, van Elk R, Krijnen L, Yakel JL, Tsetlin V, Smit AB, Ulens C PLoS Biol. 2011 Mar;9(3):e1001034. Epub 2011 Mar 29. PMID:21468359<ref>PMID:21468359</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2xyt" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Acetylcholine binding protein 3D structures|Acetylcholine binding protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 21: Line 27:
</StructureSection>
</StructureSection>
[[Category: Aplysia californica]]
[[Category: Aplysia californica]]
-
[[Category: Brams, M.]]
+
[[Category: Large Structures]]
-
[[Category: Elk, R Van.]]
+
[[Category: Brams M]]
-
[[Category: Krijnen, L.]]
+
[[Category: Krijnen L]]
-
[[Category: Kuzmin, D.]]
+
[[Category: Kuzmin D]]
-
[[Category: Pandya, A.]]
+
[[Category: Pandya A]]
-
[[Category: Smit, A B.]]
+
[[Category: Smit AB]]
-
[[Category: Tsetlin, V.]]
+
[[Category: Tsetlin V]]
-
[[Category: Ulens, C.]]
+
[[Category: Ulens C]]
-
[[Category: Yakel, J L.]]
+
[[Category: Yakel JL]]
-
[[Category: Amidation]]
+
[[Category: Van Elk R]]
-
[[Category: Conformational flexibility]]
+
-
[[Category: Conotoxin]]
+
-
[[Category: Neurotoxin nicotinic]]
+
-
[[Category: Postsynaptic neurotoxin]]
+
-
[[Category: Receptor]]
+
-
[[Category: Receptor-toxin complex]]
+

Current revision

Crystal structure of Aplysia californica AChBP in complex with d- tubocurarine

PDB ID 2xyt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools