This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3b1p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:51, 11 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of Burkholderia thailandensis nucleoside kinase (BthNK) in complex with ADP-inosine==
==Structure of Burkholderia thailandensis nucleoside kinase (BthNK) in complex with ADP-inosine==
-
<StructureSection load='3b1p' size='340' side='right' caption='[[3b1p]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
<StructureSection load='3b1p' size='340' side='right'caption='[[3b1p]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3b1p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_thailandensis Burkholderia thailandensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B1P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B1P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3b1p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_thailandensis_E264 Burkholderia thailandensis E264]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B1P FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NOS:INOSINE'>NOS</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3b1n|3b1n]], [[3b1o|3b1o]], [[3b1q|3b1q]], [[3b1r|3b1r]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NOS:INOSINE'>NOS</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bth_I1158 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=57975 Burkholderia thailandensis])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b1p OCA], [https://pdbe.org/3b1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b1p RCSB], [https://www.ebi.ac.uk/pdbsum/3b1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b1p ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diphosphate-purine_nucleoside_kinase Diphosphate-purine nucleoside kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.143 2.7.1.143] </span></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b1p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b1p RCSB], [http://www.ebi.ac.uk/pdbsum/3b1p PDBsum]</span></td></tr>
+
== Function ==
-
<table>
+
[https://www.uniprot.org/uniprot/Q2SZE4_BURTA Q2SZE4_BURTA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 16:
Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity.,Yasutake Y, Ota H, Hino E, Sakasegawa S, Tamura T Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):945-56. Epub 2011 Oct 19. PMID:22101821<ref>PMID:22101821</ref>
Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity.,Yasutake Y, Ota H, Hino E, Sakasegawa S, Tamura T Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):945-56. Epub 2011 Oct 19. PMID:22101821<ref>PMID:22101821</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3b1p" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Burkholderia thailandensis]]
+
[[Category: Burkholderia thailandensis E264]]
-
[[Category: Diphosphate-purine nucleoside kinase]]
+
[[Category: Large Structures]]
-
[[Category: Hino, E.]]
+
[[Category: Hino E]]
-
[[Category: Ota, H.]]
+
[[Category: Ota H]]
-
[[Category: Sakasegawa, S.]]
+
[[Category: Sakasegawa S]]
-
[[Category: Tamura, T.]]
+
[[Category: Tamura T]]
-
[[Category: Yasutake, Y.]]
+
[[Category: Yasutake Y]]
-
[[Category: Atp binding]]
+
-
[[Category: Kinase]]
+
-
[[Category: Mg binding]]
+
-
[[Category: Nucleoside binding]]
+
-
[[Category: Rossmann fold]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of Burkholderia thailandensis nucleoside kinase (BthNK) in complex with ADP-inosine

PDB ID 3b1p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3b1p"
Personal tools