4d1q

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'''Unreleased structure'''
 
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The entry 4d1q is ON HOLD until Paper Publication
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==Hermes transposase bound to its terminal inverted repeat==
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<StructureSection load='4d1q' size='340' side='right'caption='[[4d1q]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4d1q]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Musca_domestica Musca domestica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D1Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D1Q FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d1q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d1q OCA], [https://pdbe.org/4d1q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d1q RCSB], [https://www.ebi.ac.uk/pdbsum/4d1q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d1q ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q25442_MUSDO Q25442_MUSDO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hermes is a member of the hAT transposon superfamily that has active representatives, including McClintock's archetypal Ac mobile genetic element, in many eukaryotic species. The crystal structure of the Hermes transposase-DNA complex reveals that Hermes forms an octameric ring organized as a tetramer of dimers. Although isolated dimers are active in vitro for all the chemical steps of transposition, only octamers are active in vivo. The octamer can provide not only multiple specific DNA-binding domains to recognize repeated subterminal sequences within the transposon ends, which are important for activity, but also multiple nonspecific DNA binding surfaces for target capture. The unusual assembly explains the basis of bipartite DNA recognition at hAT transposon ends, provides a rationale for transposon end asymmetry, and suggests how the avidity provided by multiple sites of interaction could allow a transposase to locate its transposon ends amidst a sea of chromosomal DNA.
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Authors: Hickman, A.B., Ewis, H., Li, X., Knapp, J., Laver, T., Doss, A.L., Tolun, G., Steven, A., Grishaev, A., Bax, A., Atkinson, P., Craig, N.L., Dyda, F.
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Structural Basis of hAT Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca domestica.,Hickman AB, Ewis HE, Li X, Knapp JA, Laver T, Doss AL, Tolun G, Steven AC, Grishaev A, Bax A, Atkinson PW, Craig NL, Dyda F Cell. 2014 Jul 17;158(2):353-67. doi: 10.1016/j.cell.2014.05.037. PMID:25036632<ref>PMID:25036632</ref>
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Description: Hermes transposase bound to its terminal inverted repeat
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4d1q" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Transposase 3D structures|Transposase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Musca domestica]]
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[[Category: Atkinson P]]
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[[Category: Bax A]]
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[[Category: Craig NL]]
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[[Category: Doss AL]]
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[[Category: Dyda F]]
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[[Category: Ewis H]]
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[[Category: Grishaev A]]
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[[Category: Hickman AB]]
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[[Category: Knapp J]]
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[[Category: Laver T]]
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[[Category: Li X]]
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[[Category: Steven A]]
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[[Category: Tolun G]]

Current revision

Hermes transposase bound to its terminal inverted repeat

PDB ID 4d1q

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