This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3d8k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:56, 2 February 2022) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
==Crsytal structure of a phosphatase from a toxoplasma gondii==
+
 
-
<StructureSection load='3d8k' size='340' side='right' caption='[[3d8k]], [[Resolution|resolution]] 2.71&Aring;' scene=''>
+
==Crystal structure of a phosphatase from a toxoplasma gondii==
 +
<StructureSection load='3d8k' size='340' side='right'caption='[[3d8k]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3d8k]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D8K FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D8K FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8k OCA], [https://pdbe.org/3d8k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d8k RCSB], [https://www.ebi.ac.uk/pdbsum/3d8k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d8k ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3d8k TOPSAN]</span></td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pp2c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5811 Toxoplasma gondii])</td></tr>
+
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3d8k RCSB], [http://www.ebi.ac.uk/pdbsum/3d8k PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3d8k TOPSAN]</span></td></tr>
+
-
<table>
+
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8k_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8k_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d8k ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[Protein phosphatase 3D structures|Protein phosphatase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Toxoplasma gondii]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Damodharan, L.]]
+
[[Category: Damodharan L]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S.]]
+
-
[[Category: 9110a1]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: New york structural genomix research consortium]]
+
-
[[Category: Nysgrc]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Phosphatase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-ii]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Toxoplasma gondii.]]
+

Current revision

Crystal structure of a phosphatase from a toxoplasma gondii

PDB ID 3d8k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools