3gzc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:46, 1 November 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of human selenocysteine lyase==
==Structure of human selenocysteine lyase==
-
<StructureSection load='3gzc' size='340' side='right' caption='[[3gzc]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3gzc' size='340' side='right'caption='[[3gzc]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gzc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2hdy 2hdy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gzc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2hdy 2hdy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GZC FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLR:(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL+DIHYDROGEN+PHOSPHATE'>PLR</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCL, SCLY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLR:(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL+DIHYDROGEN+PHOSPHATE'>PLR</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Selenocysteine_lyase Selenocysteine lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.4.1.16 4.4.1.16] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gzc OCA], [https://pdbe.org/3gzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gzc RCSB], [https://www.ebi.ac.uk/pdbsum/3gzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gzc ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gzc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gzc RCSB], [http://www.ebi.ac.uk/pdbsum/3gzc PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/SCLY_HUMAN SCLY_HUMAN] Catalyzes the decomposition of L-selenocysteine to L-alanine and elemental selenium (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gzc_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gzc_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gzc ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 26:
Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.,Collins R, Johansson AL, Karlberg T, Markova N, van den Berg S, Olesen K, Hammarstrom M, Flores A, Schuler H, Schiavone LH, Brzezinski P, Arner ES, Hogbom M PLoS One. 2012;7(1):e30581. Epub 2012 Jan 25. PMID:22295093<ref>PMID:22295093</ref>
Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.,Collins R, Johansson AL, Karlberg T, Markova N, van den Berg S, Olesen K, Hammarstrom M, Flores A, Schuler H, Schiavone LH, Brzezinski P, Arner ES, Hogbom M PLoS One. 2012;7(1):e30581. Epub 2012 Jan 25. PMID:22295093<ref>PMID:22295093</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3gzc" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Selenocysteine lyase|Selenocysteine lyase]]
== References ==
== References ==
<references/>
<references/>
Line 31: Line 37:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Selenocysteine lyase]]
+
[[Category: Large Structures]]
-
[[Category: Arrowsmith, C.]]
+
[[Category: Arrowsmith C]]
-
[[Category: Berg, S Van Den.]]
+
[[Category: Berglund H]]
-
[[Category: Berglund, H.]]
+
[[Category: Collins R]]
-
[[Category: Collins, R.]]
+
[[Category: Edwards A]]
-
[[Category: Edwards, A.]]
+
[[Category: Ehn M]]
-
[[Category: Ehn, M.]]
+
[[Category: Flodin S]]
-
[[Category: Flodin, S.]]
+
[[Category: Flores A]]
-
[[Category: Flores, A.]]
+
[[Category: Graslund S]]
-
[[Category: Graslund, S.]]
+
[[Category: Hallberg BM]]
-
[[Category: Hallberg, B M.]]
+
[[Category: Hammarstrom M]]
-
[[Category: Hammarstrom, M.]]
+
[[Category: Hogbom M]]
-
[[Category: Hogbom, M.]]
+
[[Category: Holmberg-Schiavone L]]
-
[[Category: Holmberg-Schiavone, L.]]
+
[[Category: Karlberg T]]
-
[[Category: Karlberg, T.]]
+
[[Category: Kotenyova T]]
-
[[Category: Kotenyova, T.]]
+
[[Category: Nilsson-Ehle P]]
-
[[Category: Nilsson-Ehle, P.]]
+
[[Category: Nordlund P]]
-
[[Category: Nordlund, P.]]
+
[[Category: Nyman T]]
-
[[Category: Nyman, T.]]
+
[[Category: Ogg D]]
-
[[Category: Ogg, D.]]
+
[[Category: Persson C]]
-
[[Category: Persson, C.]]
+
[[Category: Sagemark J]]
-
[[Category: SGC, Structural Genomics Consortium.]]
+
[[Category: Schuler H]]
-
[[Category: Sagemark, J.]]
+
[[Category: Stenmark P]]
-
[[Category: Schuler, H.]]
+
[[Category: Sundstrom M]]
-
[[Category: Stenmark, P.]]
+
[[Category: Thorsell AG]]
-
[[Category: Sundstrom, M.]]
+
[[Category: Uppenberg J]]
-
[[Category: Thorsell, A G.]]
+
[[Category: Van Den Berg S]]
-
[[Category: Uppenberg, J.]]
+
[[Category: Weigelt J]]
-
[[Category: Weigelt, J.]]
+
-
[[Category: Human]]
+
-
[[Category: Lyase]]
+
-
[[Category: Plp]]
+
-
[[Category: Pyridoxal phosphate]]
+
-
[[Category: Pyridoxal-5'-phosphate]]
+
-
[[Category: Scly]]
+
-
[[Category: Selenocysteine]]
+
-
[[Category: Sgc]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Structural genomics consortium]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of human selenocysteine lyase

PDB ID 3gzc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools